PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0032608.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 537aa MW: 60521.4 Da PI: 7.0078

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0032608.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.5	5.4e-21	207	304	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr. 71 +Wt++ v++Li ++ ++++ + +kk++W+ vsk m +g+++sp+qC++k+++lnkryk+++++ +++ Rmu_sc0032608.1_g000002.1 207 KWTDRVVRLLISVVACVDDDGTVEGggeglkrksavlQKKGKWKTVSKIMIGKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGt 290 7************8877777532345666777888********************************************5 PP trihelix 72 tsessstcpyfdql 85 +++++++ + d++ Rmu_sc0032608.1_g000002.1 291 SCRVVENPTLMDSM 304 69999988888877 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MLGLYGLSSA SYNSDHGSPE LSVQQTGGIF PVKAVTLVPS NSNSSKLLRR RIFMLDLHKI 60 WVCWSVFKLS RAFVPEKQHC MTGLIGLGGG FLSGPSGGTL DLESAIPRHQ EKQLGLPGLA 120 HHQHHGIVMS GVGVGVDHRP VGLAEVKGSI PRGASMNVVK GKAVAPFNTN NAYNLSEEDE 180 PSYTEDGNGE NVEGAKGKKG STWQRMKWTD RVVRLLISVV ACVDDDGTVE GGGEGLKRKS 240 AVLQKKGKWK TVSKIMIGKG CHVSPQQCED KFNDLNKRYK RLNDILGRGT SCRVVENPTL 300 MDSMPHLSAK AKDDVRKILS SKQLFYKEMC AYHNGQWIPG CHDLDLKGHP LPPGRCSTDN 360 NVSEEEGAEE HHDTEDDELD DEDNNADGID RDRMGRMGDR TRSSEEDDHF WQQVSLDSFE 420 VEMAEVLQDP TKSLWERREW IKKQKLQLQQ QRVSCEAEAL ELEKQRYKWL RYRSKKDREL 480 ERLRLENERM RLENDKRVLQ LRQKELEIDV RLSEASLEPS VGIDRLLGRD LDLGRHQ

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MLGLYGLSSA SYNSDHGSPE LSVQQTGGIF PVKAVTLVPS NSNSSKLLRR RIFMLDLHKI  60
WVCWSVFKLS RAFVPEKQHC MTGLIGLGGG FLSGPSGGTL DLESAIPRHQ EKQLGLPGLA  120
HHQHHGIVMS GVGVGVDHRP VGLAEVKGSI PRGASMNVVK GKAVAPFNTN NAYNLSEEDE  180
PSYTEDGNGE NVEGAKGKKG STWQRMKWTD RVVRLLISVV ACVDDDGTVE GGGEGLKRKS  240
AVLQKKGKWK TVSKIMIGKG CHVSPQQCED KFNDLNKRYK RLNDILGRGT SCRVVENPTL  300
MDSMPHLSAK AKDDVRKILS SKQLFYKEMC AYHNGQWIPG CHDLDLKGHP LPPGRCSTDN  360
NVSEEEGAEE HHDTEDDELD DEDNNADGID RDRMGRMGDR TRSSEEDDHF WQQVSLDSFE  420
VEMAEVLQDP TKSLWERREW IKKQKLQLQQ QRVSCEAEAL ELEKQRYKWL RYRSKKDREL  480
ERLRLENERM RLENDKRVLQ LRQKELEIDV RLSEASLEPS VGIDRLLGRD LDLGRHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	6e-65	Trihelix family protein