PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0030974.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 265aa    MW: 30072.3 Da    PI: 9.703
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0030974.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.5e-16153251299
                                EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-....TTHHHHHHHHT--TT-E CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvlt....kGWkeFvkangLkegDf 79 
                                + + +++++l++  + ++ +fa++h        s +l+l++++ r+W  +li+  + ++ v++    +GWk F ++n+L+egD+
  Rmu_sc0030974.1_g000004.1 153 IMIKMTAYYLRRE-MFISASFATKHlcR--AGASCDLSLQTPDMRTWIAELIVYETTESRVFAkikgAGWKAFKEENHLEEGDV 233
                                5667899999998.9**********662..445679***************8855555544444777***************** PP

                                EEEEE-SSSEE..EEEEE-S CS
                         B3  80 vvFkldgrsefelvvkvfrk 99 
                                +v++l+++ +f  +v++fr+
  Rmu_sc0030974.1_g000004.1 234 CVLELIEECKF--KVSIFRA 251
                                ******98999..9**9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MGSGTSRDGR KDISKLYGRL YIPQGTNCET LWPIEVKKSA HGGRMWLHKG WQEFANFYSL  60
EQGYLVFVSY KGEHSHFQGR IFHWNDVEIE YPIRGSGGTD GIPKRKRTRA HGGMPNAYLK  120
AARAISNSSG SSGNEHQNVL STANSFKSDK PFIMIKMTAY YLRREMFISA SFATKHLCRA  180
GASCDLSLQT PDMRTWIAEL IVYETTESRV FAKIKGAGWK AFKEENHLEE GDVCVLELIE  240
ECKFKVSIFR ARVKINELSE AGRPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-12B3 family protein