PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0030116.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 568aa    MW: 62458.3 Da    PI: 8.4827
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0030116.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.7e-24112213199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +g
  Rmu_sc0030116.1_g000001.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAG 193
                                89****************************996555555..8****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D++vF   + +++ l+v+++r+
  Rmu_sc0030116.1_g000001.1 194 DSIVFL--RAENGDLCVGIRRA 213
                                ******..4488999****997 PP
2Auxin_resp115.35.4e-38286369183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                aa+ a+++++FevvY+Prast+eF+vk++ v++a++v+++ GmRfkmafetedss++++ +Gt+++v   d +rWpnS+Wr+L+
  Rmu_sc0030116.1_g000001.1 286 AATLAANGQPFEVVYYPRASTPEFCVKASAVRAAMRVQWCSGMRFKMAFETEDSSRISWfMGTIASVDVNDKIRWPNSPWRVLQ 369
                                68899*****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    
MKDMEKSLDP QLWHACAGGM VQMPPANSKV FYFPQGHAEH AQTHVDFPAS SVRIPPLILC  60
RVAEIRYMAD PETDEVFARI RLVPSESNEV FGQDQGSVDS DGSGNPEKPS SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGSPEG SSESGWNHGG SGGGSGLPYS  240
GFSVFLKDEE SKMGRNNGFG NSSLNNGKVR GGRGGGRVRP EAVVEAATLA ANGQPFEVVY  300
YPRASTPEFC VKASAVRAAM RVQWCSGMRF KMAFETEDSS RISWFMGTIA SVDVNDKIRW  360
PNSPWRVLQV TWDEPDLLQN VKCVSPWLIE LVSNFPIIHM APFSPPQKKL RIPQQPDFDG  420
QLTLPSFSGN PLGSSSPMCC LPDNTPAGIQ GARHAQLRIS LSNLHFNSKL QSGLFSSSFQ  480
RFDQNSRIPN GIRNGHTNSN ESLSCLLTMG SSNQNLEKSD DVKKHQFLLF GQPIITEQQI  540
SRSCSSDAVS QVLAGNNLKD ENQGRKRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein