PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0030082.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 938aa MW: 103562 Da PI: 7.769

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0030082.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.5	1e-17	391	490	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 f+k l+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v Rmu_sc0030082.1_g000002.1 391 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTV 473 89************************555567778***********99899999999.************** PP EEEE-SSSEE..EEEEE- CS B3 81 vFkldgrsefelvvkvfr 98 +F++++ e++l +++++ Rmu_sc0030082.1_g000002.1 474 TFSRME-PEGKLIMGFRK 490 *876.77777777766 PP

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence
MSRILVLQSI AASKFRRSEF SISTVGLGKP NFRRDGTVIR GACVGVSLSL PAFRLCYCGG 60 SWKASREMDP SACMNAYCGS SSSIEWKKGW ALRSGRFANL CHKCGTAYEE SLFCDVFHSK 120 ESGWRECAQC GKHLHCGCIA SRSLLDFLDS GGVKCKHCTK NSEPHPIASD EKPDGPGISK 180 ISELKLAPSD NQLDSNNVDK VKLMQMENNK ECNGLRNLLQ SQNNETVGLL QKMKQDDVPA 240 PVVEIGGTSL SVFNQTSNVS SESSKPEIYK ANLGINDIYE SLPHTNLSMS LGAPAGYANP 300 FPGIGVDEHA RTSSLFLQGA RSRHLLPKPP KLALATGLEE NSTMASQARV ARPPAEGRGR 360 NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKMLSASDA GRIGRLVLPK ACAEAYFPPI 420 SQPEGLPLRI QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMEP 480 EGKLIMGFRK ASNSVAMQST KGMDPHLSAL PKQLTAATGD PSWHKSEKHE IRTREGLLLQ 540 SLVVPERKRT RNIGSKSKRL LIDSQDALEL KLTWEEAQDL LRPPPAVKPS TVMIEDLEFE 600 EYEEPPVFGK RSIFIVRSTG EHEQWAQCDG CSKWRRLPVD VLLPSKWMCT DNVWDQNRCS 660 CSAPDELTPR ELESFLRLSK EFKKRRMATN HRPIQEHESS GLDALANAAI LGDNVADPGT 720 ASVATTTKHP RHRPGCSCIV CIQPPSGKGK HKPSCTCQVC MTVKRRFKTL MINKKKRQSE 780 REAEIACRNQ LAWGPRDEAE VDSTSRHVSS HLDPSDNEAK SPNESESKSQ LKLAESGKGK 840 LDLNCHPGRE VDLPAGPSQL SMMSLLQVAT LPLQSYLKQT GLTSLVTEQQ TSSTSPVPLQ 900 ATEGNEEQLN EDQCVVSVVQ EGESGGDERQ DQSQEDPL

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence

MSRILVLQSI AASKFRRSEF SISTVGLGKP NFRRDGTVIR GACVGVSLSL PAFRLCYCGG  60
SWKASREMDP SACMNAYCGS SSSIEWKKGW ALRSGRFANL CHKCGTAYEE SLFCDVFHSK  120
ESGWRECAQC GKHLHCGCIA SRSLLDFLDS GGVKCKHCTK NSEPHPIASD EKPDGPGISK  180
ISELKLAPSD NQLDSNNVDK VKLMQMENNK ECNGLRNLLQ SQNNETVGLL QKMKQDDVPA  240
PVVEIGGTSL SVFNQTSNVS SESSKPEIYK ANLGINDIYE SLPHTNLSMS LGAPAGYANP  300
FPGIGVDEHA RTSSLFLQGA RSRHLLPKPP KLALATGLEE NSTMASQARV ARPPAEGRGR  360
NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKMLSASDA GRIGRLVLPK ACAEAYFPPI  420
SQPEGLPLRI QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMEP  480
EGKLIMGFRK ASNSVAMQST KGMDPHLSAL PKQLTAATGD PSWHKSEKHE IRTREGLLLQ  540
SLVVPERKRT RNIGSKSKRL LIDSQDALEL KLTWEEAQDL LRPPPAVKPS TVMIEDLEFE  600
EYEEPPVFGK RSIFIVRSTG EHEQWAQCDG CSKWRRLPVD VLLPSKWMCT DNVWDQNRCS  660
CSAPDELTPR ELESFLRLSK EFKKRRMATN HRPIQEHESS GLDALANAAI LGDNVADPGT  720
ASVATTTKHP RHRPGCSCIV CIQPPSGKGK HKPSCTCQVC MTVKRRFKTL MINKKKRQSE  780
REAEIACRNQ LAWGPRDEAE VDSTSRHVSS HLDPSDNEAK SPNESESKSQ LKLAESGKGK  840
LDLNCHPGRE VDLPAGPSQL SMMSLLQVAT LPLQSYLKQT GLTSLVTEQQ TSSTSPVPLQ  900
ATEGNEEQLN EDQCVVSVVQ EGESGGDERQ DQSQEDPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein