PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0029995.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CAMTA

Protein Properties

Length: 1018aa MW: 114039 Da PI: 8.2354

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0029995.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	176.9	2.6e-55	30	145	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyY 85 +e ++rwl+++ei++iL n+++++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+v+vl+cyY Rmu_sc0029995.1_g000002.1 30 QEsQQRWLRPTEICEILRNYQRFQLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYY 113 4559****************************************************************************** PP CG-1 86 ahseenptfqrrcywlLeeelekivlvhylev 117 ah+e+n++fqrr+yw+L+++l++ivlvhy+ v Rmu_sc0029995.1_g000002.1 114 AHGEDNENFQRRSYWMLDTHLQHIVLVHYRMV 145 ***************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1018 aa Download sequence
MCILCTCHQI GMKVSSANFV FTFWCSTILQ ESQQRWLRPT EICEILRNYQ RFQLTPDPPV 60 RPPAGSLFLF DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE 120 NFQRRSYWML DTHLQHIVLV HYRMVEGSKS GVSRVLVDPG SQVGSPQTAA APCSAQANSP 180 APTVQTSFTS SPIKVDWNGQ TLSTEFEDVD SQGDARASSL AQPMPGSVLN NACLQLPEVG 240 RLSESFRNPS GTWYAGPKDY QSAGSSDWAM NRSTRESSLH DQNLFVEDIK KNFFEELNGS 300 DSITHKLTDA RLDSNRKGKD VTCEDRLTND IDVQAVTTPS QRETQFQGHS DPHTVAFSTA 360 QVEKSSGDGG VRRGEPVELK KLDSFGRWMD KEIGVDCDDS LMASDSGNYW NTLEAENGDR 420 EVSSLSGHMQ LDVDSLGPSL SQEQLFSICD FSPDWSYSGT ETKVLIVGRF LGGKKNFTET 480 KWGCMFGEIE VPAEVLTDNV IRCQTPLHAP GCVPFYVTCR NRLACSEVRE FEYREKPIGI 540 SLNSSREDEL RFQIRLAKLL NLGSERKWLE CSALDCDKCK LKSSICSIRS NSGSDWMIAD 600 GDSMVCKRDQ LTHIDVLIQN LLKDRLFEWL VYKVHEEGKG PHVLDNEGQG VLHLAAGLGY 660 EWAMGLIVAA GVSPNFRDAR GRTGLHWASY FGREETVITL LGLGAAPGAV EDPTPAFPGG 720 QTAADLASSR GHKGIAGYLA EADLTSHLSL LTVNEKTMDN VSATIAAEKA IEISEATTSD 780 VTVDDENSLK GSLEAVRKSA HAVALIQATF RARSFRQRQL TQSSIDIPEA SIDLVALGSL 840 KRVQKFSHYE DYLHSAAALK IQRKYRGWKG RKEFLKIRNR IVKLQAHVRG HQVRKNYKKL 900 VWSVGIMEKV ILRWRRKQPG LRGFRVEKAI EDVSSENKRS DDYEFLSVGR KQKFAGVEKA 960 LARVQSMSRH PEAREQYMRL QSKFEKLKVI LHSISSFSLI RKKKKDLHSC LNAIISST

Sequence ? help Back to Top

Protein Sequence Length: 1018 aa Download sequence

MCILCTCHQI GMKVSSANFV FTFWCSTILQ ESQQRWLRPT EICEILRNYQ RFQLTPDPPV  60
RPPAGSLFLF DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE  120
NFQRRSYWML DTHLQHIVLV HYRMVEGSKS GVSRVLVDPG SQVGSPQTAA APCSAQANSP  180
APTVQTSFTS SPIKVDWNGQ TLSTEFEDVD SQGDARASSL AQPMPGSVLN NACLQLPEVG  240
RLSESFRNPS GTWYAGPKDY QSAGSSDWAM NRSTRESSLH DQNLFVEDIK KNFFEELNGS  300
DSITHKLTDA RLDSNRKGKD VTCEDRLTND IDVQAVTTPS QRETQFQGHS DPHTVAFSTA  360
QVEKSSGDGG VRRGEPVELK KLDSFGRWMD KEIGVDCDDS LMASDSGNYW NTLEAENGDR  420
EVSSLSGHMQ LDVDSLGPSL SQEQLFSICD FSPDWSYSGT ETKVLIVGRF LGGKKNFTET  480
KWGCMFGEIE VPAEVLTDNV IRCQTPLHAP GCVPFYVTCR NRLACSEVRE FEYREKPIGI  540
SLNSSREDEL RFQIRLAKLL NLGSERKWLE CSALDCDKCK LKSSICSIRS NSGSDWMIAD  600
GDSMVCKRDQ LTHIDVLIQN LLKDRLFEWL VYKVHEEGKG PHVLDNEGQG VLHLAAGLGY  660
EWAMGLIVAA GVSPNFRDAR GRTGLHWASY FGREETVITL LGLGAAPGAV EDPTPAFPGG  720
QTAADLASSR GHKGIAGYLA EADLTSHLSL LTVNEKTMDN VSATIAAEKA IEISEATTSD  780
VTVDDENSLK GSLEAVRKSA HAVALIQATF RARSFRQRQL TQSSIDIPEA SIDLVALGSL  840
KRVQKFSHYE DYLHSAAALK IQRKYRGWKG RKEFLKIRNR IVKLQAHVRG HQVRKNYKKL  900
VWSVGIMEKV ILRWRRKQPG LRGFRVEKAI EDVSSENKRS DDYEFLSVGR KQKFAGVEKA  960
LARVQSMSRH PEAREQYMRL QSKFEKLKVI LHSISSFSLI RKKKKDLHSC LNAIISST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1001	1006	RKKKKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein