PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0028619.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 268aa    MW: 30405.9 Da    PI: 4.9634
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0028619.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.61.4e-5461331128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                lppGfrFhPtdeelv++yLk+k+ g+++el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gy
  Rmu_sc0028619.1_g000003.1   6 LPPGFRFHPTDEELVNYYLKRKIIGQEIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGY 88 
                                79****************************.99**************84335556888************************** PP

                        NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                Wk+tgkd++vls +++++g+kktLv+y+grap+g +tdWvmheyrl
  Rmu_sc0028619.1_g000003.1  89 WKSTGKDRRVLS-QNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133
                                ************.8999***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MAPVGLPPGF RFHPTDEELV NYYLKRKIIG QEIELDIIPE VDLYKCEPWE LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVLS QNRAIGMKKT LVYYRGRAPQ  120
GIRTDWVMHE YRLDDKADCL DDTSAGIQDS FALCRVFKKN GICAEIEEQG GQSSSSDVSL  180
LIHERSSQLL AAGGLHHNDH CSIETMSPEN IPRASSSSCL QDLEEEDKDD SWMQFITDDP  240
WSSSNTPING TTTEVDLSQS HAGVAFTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-122NAC family protein