PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0027737.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 651aa MW: 71416.6 Da PI: 7.3551

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0027737.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.3	1e-16	460	506	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Rmu_sc0027737.1_g000001.1 460 VHNLSERRRRDRINEKMKALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 506 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence
KYTPENIPTG PRGQIYTRDF ITKLQPLLNR IKEMGEKYSK TPTQVALNWL ITQDNVVPIP 60 GAKNAEQAME FAGALGWKLN DDEVTELRSL ASEIKPLKRS QSCALIGTSV CSDMNSCIPD 120 WNFEGDLPLT NQKKPLGPDH ELVELLWRNG QVVLHSQTNR KPGPNPNESR QVQKHDQIRV 180 GGFYGNSGNL IHDEDAVSMI QYPIEDSFDK EFSHFFSELP SCDSLEIEKP IKQFGEEKFV 240 KFDASSTTHL VSSSPQPNVK SSTGVAYPEN PMPPPRFQIS NPTDKNQNLG GLGKIVNFSQ 300 FSTLGKGVVG SSRKQLGGKD PGKLNQAEVR ECSMMTVGSS YSGSNQVPND FDVSRASSNG 360 DGTTGFSTGP LYNNVQKMMP LSEGGMTETL DPTLTSSSGG SGSSFGRGGK QSNVVNSNKR 420 KGRDAEDSEC QSEAAEIESA AGNKPAQRSG SSRRTRAAEV HNLSERRRRD RINEKMKALQ 480 ELIPHSNKTD KASMLDEAIE YLKSLQLQLQ VMWMGGGMAP MMFPGVQHYM SRMGMGMGPP 540 AMPSMHNLMQ LPRVPLVDQC MTVTPPTNQA VMCQTPVLNP VDYHNQMQNP SIQEQYARLM 600 GFHHMQTMSQ PMNMFRFGSQ PLPQSQMMAP TGMNTGPLSG GAATNDALSG K

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence

KYTPENIPTG PRGQIYTRDF ITKLQPLLNR IKEMGEKYSK TPTQVALNWL ITQDNVVPIP  60
GAKNAEQAME FAGALGWKLN DDEVTELRSL ASEIKPLKRS QSCALIGTSV CSDMNSCIPD  120
WNFEGDLPLT NQKKPLGPDH ELVELLWRNG QVVLHSQTNR KPGPNPNESR QVQKHDQIRV  180
GGFYGNSGNL IHDEDAVSMI QYPIEDSFDK EFSHFFSELP SCDSLEIEKP IKQFGEEKFV  240
KFDASSTTHL VSSSPQPNVK SSTGVAYPEN PMPPPRFQIS NPTDKNQNLG GLGKIVNFSQ  300
FSTLGKGVVG SSRKQLGGKD PGKLNQAEVR ECSMMTVGSS YSGSNQVPND FDVSRASSNG  360
DGTTGFSTGP LYNNVQKMMP LSEGGMTETL DPTLTSSSGG SGSSFGRGGK QSNVVNSNKR  420
KGRDAEDSEC QSEAAEIESA AGNKPAQRSG SSRRTRAAEV HNLSERRRRD RINEKMKALQ  480
ELIPHSNKTD KASMLDEAIE YLKSLQLQLQ VMWMGGGMAP MMFPGVQHYM SRMGMGMGPP  540
AMPSMHNLMQ LPRVPLVDQC MTVTPPTNQA VMCQTPVLNP VDYHNQMQNP SIQEQYARLM  600
GFHHMQTMSQ PMNMFRFGSQ PLPQSQMMAP TGMNTGPLSG GAATNDALSG K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	465	470	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	9e-39	bHLH family protein