PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0026537.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 516aa MW: 58710.9 Da PI: 6.2973

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0026537.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.4	9.5e-24	109	209	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 +Wt+ +v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k Rmu_sc0026537.1_g000004.1 109 KWTDTMVRLLIMAVFYIGDEGGSEGpdptgkkksgggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGK 192 7**************9999975446667788999999******************************************* PP trihelix 71 r.tsessstcpyfdqle 86 + +++++++ +++++e Rmu_sc0026537.1_g000004.1 193 GtACKVVENQGLLEKME 209 *5599999999999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MEPNGLGGGL FPEMRSGMLG LEMPLHQTQN PPNPQNPHHH MHQPQMVSYA HHEADHNHHP 60 QAHQSAKHGY PYATKPKQIT LSDEDEPGFG ADDSAGENKR KISPWQRMKW TDTMVRLLIM 120 AVFYIGDEGG SEGPDPTGKK KSGGGLLQKK GKWKSVSRAM MEKGFYVSPQ QCEDKFNDLN 180 KRYKRVNDIL GKGTACKVVE NQGLLEKMEL SSKMKDEVKK LLNSKHLFFR EMCAYHNSCG 240 HGTVGAAGAS GVHNSSPEDP SEVQLQQQQQ QPQQQSGVHN SSPEDPSEVQ LQQQQQQTPQ 300 QQRCFHVSEN AHVVANSGRS ETEGSKMFKA ESGGEDEDED DEDDDSEDDD DEEEEGVVEG 360 VSRGQIGHGH EDEDENDHER AKRPRKGSCF SGSSHKMLMQ QLSSEVSGVI QDVSKSPWEK 420 KQWMKARLIQ LEEQQVNYQY QSFELEKQRL KWVKYSSKKE RDMERAKLAN ERRRLENERM 480 LLLVRQKELE LLDLHHHQQQ QHQQQNSSNK RSDLTG

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MEPNGLGGGL FPEMRSGMLG LEMPLHQTQN PPNPQNPHHH MHQPQMVSYA HHEADHNHHP  60
QAHQSAKHGY PYATKPKQIT LSDEDEPGFG ADDSAGENKR KISPWQRMKW TDTMVRLLIM  120
AVFYIGDEGG SEGPDPTGKK KSGGGLLQKK GKWKSVSRAM MEKGFYVSPQ QCEDKFNDLN  180
KRYKRVNDIL GKGTACKVVE NQGLLEKMEL SSKMKDEVKK LLNSKHLFFR EMCAYHNSCG  240
HGTVGAAGAS GVHNSSPEDP SEVQLQQQQQ QPQQQSGVHN SSPEDPSEVQ LQQQQQQTPQ  300
QQRCFHVSEN AHVVANSGRS ETEGSKMFKA ESGGEDEDED DEDDDSEDDD DEEEEGVVEG  360
VSRGQIGHGH EDEDENDHER AKRPRKGSCF SGSSHKMLMQ QLSSEVSGVI QDVSKSPWEK  420
KQWMKARLIQ LEEQQVNYQY QSFELEKQRL KWVKYSSKKE RDMERAKLAN ERRRLENERM  480
LLLVRQKELE LLDLHHHQQQ QHQQQNSSNK RSDLTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	3e-72	Trihelix family protein