PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0025647.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 210aa MW: 23025.4 Da PI: 9.5379 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 92.6 | 7.9e-29 | 49 | 141 | 3 | 83 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec.. 73 g kdrh+k++T++g++d Rv l ++a++f+d+qd+LG+d++sk+++WL+++ak ai+el ++ + +s+ + Rmu_sc0025647.1_g000001.1 49 GLKDRHKKVCTAKGPKDHRVQLTTHTAIQFYDMQDQLGYDRPSKAVDWLIKKAKVAIDELEELplwnpnsiyvqT-TSSPIVli 131 669************************************************************888877777642.33322223 PP TCP 74 eaesssssas 83 +a+++ ++as Rmu_sc0025647.1_g000001.1 132 SAVQDTQNAS 141 3333333332 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MGESHKNLHH GAMTSSSASS RLGLGIRTAS SFTASEIVEA RGHILSTTGL KDRHKKVCTA 60 KGPKDHRVQL TTHTAIQFYD MQDQLGYDRP SKAVDWLIKK AKVAIDELEE LPLWNPNSIY 120 VQTTSSPIVL ISAVQDTQNA SLHFSMVEAP SSLSANRRGA MVGSSGVAEL VNQNSSNFLQ 180 VRMVWRPKLL IFVCLQLPLI KFGLETEVVG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.2 | 9e-41 | TCP family protein |