PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0024214.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 576aa MW: 64369 Da PI: 8.5542

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0024214.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.6e-06	82	103	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F rk L H++ H Rmu_sc0024214.1_g000001.1 82 VCKVCGKAFERKNALFGHMKHH 103 7*******************98 PP
2	zf-C2H2	16.8	1.9e-05	114	134	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C dCgk F + L++H r+H Rmu_sc0024214.1_g000001.1 114 CRDCGKGFESLKALTVHRRVH 134 *******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MEELRGAGHV CKLCGQSCVS GKVLGGHMRS HAFKNPIKSS RKHKKANMGF QDDGDGNVGY 60 GLRLNPKRSW KFSGKEEEDE IVCKVCGKAF ERKNALFGHM KHHSVKQRNE AQWCRDCGKG 120 FESLKALTVH RRVHAKRLKG FDETERGLTQ KLCIESLGLV RKKRSARFRL VRVHRRVHAK 180 RLKGFDEKER GLTQKLCIES LGLVRKKRSA RFRYRIASPS SSFPGLNLSE CKFGNGCGVD 240 VEEAAFCLMM ISRGLGNWGQ ISSVAESSNN NSFSVEVESP SQRKRVRDNE GGVFACDDDS 300 GSLQIKRAKV EVSADCVLDC ENDSTVKEVS EFGEIDSEFV GDEMPKSGFV LYGIEELDVE 360 TSEEEVEVGL GSMKFGLSKK AVLKACDSVN KGLYATESET FADSKKKREH KCRTCRRVFG 420 THQALGGHQR VHKRSYKSLV LKNEDGEDRT QIGTLCETED NCNPAKLESS DNSVEQEMET 480 VTVGGSERKG HVCGICLKVF ASGQALGGHK RSHYVKDSEI ATDKTRVMKQ QIFDICDAFE 540 VSHQLKLQEE NDGVEFKPWW AGTEQKHELL VGLIPN

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MEELRGAGHV CKLCGQSCVS GKVLGGHMRS HAFKNPIKSS RKHKKANMGF QDDGDGNVGY  60
GLRLNPKRSW KFSGKEEEDE IVCKVCGKAF ERKNALFGHM KHHSVKQRNE AQWCRDCGKG  120
FESLKALTVH RRVHAKRLKG FDETERGLTQ KLCIESLGLV RKKRSARFRL VRVHRRVHAK  180
RLKGFDEKER GLTQKLCIES LGLVRKKRSA RFRYRIASPS SSFPGLNLSE CKFGNGCGVD  240
VEEAAFCLMM ISRGLGNWGQ ISSVAESSNN NSFSVEVESP SQRKRVRDNE GGVFACDDDS  300
GSLQIKRAKV EVSADCVLDC ENDSTVKEVS EFGEIDSEFV GDEMPKSGFV LYGIEELDVE  360
TSEEEVEVGL GSMKFGLSKK AVLKACDSVN KGLYATESET FADSKKKREH KCRTCRRVFG  420
THQALGGHQR VHKRSYKSLV LKNEDGEDRT QIGTLCETED NCNPAKLESS DNSVEQEMET  480
VTVGGSERKG HVCGICLKVF ASGQALGGHK RSHYVKDSEI ATDKTRVMKQ QIFDICDAFE  540
VSHQLKLQEE NDGVEFKPWW AGTEQKHELL VGLIPN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	183	RKKRSARFRLVRVHRRVHAKRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	4e-14	C2H2 family protein