PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0022688.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C2H2 | ||||||||
Protein Properties | Length: 516aa MW: 57265.4 Da PI: 6.8774 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 88 | 108 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F +k +L rH+r+H Rmu_sc0022688.1_g000001.1 88 CLVCGKNFLSKKSLFRHLRSH 108 77******************9 PP | |||||||
2 | zf-C2H2 | 14.5 | 0.0001 | 277 | 299 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H+++H Rmu_sc0022688.1_g000001.1 277 FRCKLCNKTFTSYQALGGHMSSH 299 89*******************99 PP | |||||||
3 | zf-C2H2 | 14.8 | 8.5e-05 | 333 | 355 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+Fs L Hi +H Rmu_sc0022688.1_g000001.1 333 YSCNVCDKTFSGYQALGAHILSH 355 99******************997 PP | |||||||
4 | zf-C2H2 | 12.8 | 0.00036 | 448 | 470 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H r+H Rmu_sc0022688.1_g000001.1 448 HQCEECKKTFPTGQALGGHKRLH 470 79*****************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence |
MDTDHKETQV LLPNSIDLQQ PTKMPTPPEA LEQAQHREVS PPLNHICDIC HKGFRSGQAL 60 GGHKSMHFRE SEAIITSATT STSDPICCLV CGKNFLSKKS LFRHLRSHTG NLSPRAGYNS 120 GNSSSTVSDE PTFDDGKCDG VDSGSRFDLA TTLPAGWSIT RKRKRNALGT SASDCSGSDE 180 TAGNSGLDLS PKLELVTVDP KLEAEEFSGL VMLAQVCAEE ASRRNLINNN QVYQNGQIEI 240 RYVAIECKRR RLNDGYERRW SAADHYGYNC NDIDSDFRCK LCNKTFTSYQ ALGGHMSSHY 300 RLKINSKDHD HAQFNFEQHN EQHPLPPQVV STYSCNVCDK TFSGYQALGA HILSHCKDVN 360 DNNTHNSAHN SVIKDNNVPE PRQVELHSCG VCNKEFTSYQ ALGGHKSSHT KYNNNNNMDR 420 DQSNSADIST GGAEDKNERQ KLYVTVPHQC EECKKTFPTG QALGGHKRLH WKGPTGATSK 480 PSQQSSARRP LEFDLNEIPS MEDEDEINVP SVLLKL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 248 | 252 | KRRRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 8e-16 | C2H2 family protein |