PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0022687.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 516aa MW: 57265.4 Da PI: 6.8774

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0022687.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	88	108	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F +k +L rH+r+H Rmu_sc0022687.1_g000001.1 88 CLVCGKNFLSKKSLFRHLRSH 108 77******************9 PP
2	zf-C2H2	14.5	0.0001	277	299	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H+++H Rmu_sc0022687.1_g000001.1 277 FRCKLCNKTFTSYQALGGHMSSH 299 89*******************99 PP
3	zf-C2H2	14.8	8.5e-05	333	355	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+Fs L Hi +H Rmu_sc0022687.1_g000001.1 333 YSCNVCDKTFSGYQALGAHILSH 355 99******************997 PP
4	zf-C2H2	12.8	0.00036	448	470	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H r+H Rmu_sc0022687.1_g000001.1 448 HQCEECKKTFPTGQALGGHKRLH 470 79*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MDTDHKETQV LLPNSIDLQQ PTKMPTPPEA LEQAQHREVS PPLNHICDIC HKGFRSGQAL 60 GGHKSMHFRE SEAIITSATT STSDPICCLV CGKNFLSKKS LFRHLRSHTG NLSPRAGYNS 120 GNSSSTVSDE PTFDDGKCDG VDSGSRFDLA TTLPAGWSIT RKRKRNALGT SASDCSGSDE 180 TAGNSGLDLS PKLELVTVDP KLEAEEFSGL VMLAQVCAEE ASRRNLINNN QVYQNGQIEI 240 RYVAIECKRR RLNDGYERRW SAADHYGYNC NDIDSDFRCK LCNKTFTSYQ ALGGHMSSHY 300 RLKINSKDHD HAQFNFEQHN EQHPLPPQVV STYSCNVCDK TFSGYQALGA HILSHCKDVN 360 DNNTHNSAHN SVIKDNNVPE PRQVELHSCG VCNKEFTSYQ ALGGHKSSHT KYNNNNNMDR 420 DQSNSADIST GGAEDKNERQ KLYVTVPHQC EECKKTFPTG QALGGHKRLH WKGPTGATSK 480 PSQQSSARRP LEFDLNEIPS MEDEDEINVP SVLLKL

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MDTDHKETQV LLPNSIDLQQ PTKMPTPPEA LEQAQHREVS PPLNHICDIC HKGFRSGQAL  60
GGHKSMHFRE SEAIITSATT STSDPICCLV CGKNFLSKKS LFRHLRSHTG NLSPRAGYNS  120
GNSSSTVSDE PTFDDGKCDG VDSGSRFDLA TTLPAGWSIT RKRKRNALGT SASDCSGSDE  180
TAGNSGLDLS PKLELVTVDP KLEAEEFSGL VMLAQVCAEE ASRRNLINNN QVYQNGQIEI  240
RYVAIECKRR RLNDGYERRW SAADHYGYNC NDIDSDFRCK LCNKTFTSYQ ALGGHMSSHY  300
RLKINSKDHD HAQFNFEQHN EQHPLPPQVV STYSCNVCDK TFSGYQALGA HILSHCKDVN  360
DNNTHNSAHN SVIKDNNVPE PRQVELHSCG VCNKEFTSYQ ALGGHKSSHT KYNNNNNMDR  420
DQSNSADIST GGAEDKNERQ KLYVTVPHQC EECKKTFPTG QALGGHKRLH WKGPTGATSK  480
PSQQSSARRP LEFDLNEIPS MEDEDEINVP SVLLKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	252	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	8e-16	C2H2 family protein