PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0019694.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 348aa MW: 38768 Da PI: 6.6378

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0019694.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	105.3	5e-33	17	114	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 aCaaC+++r++C++dCv+apyf a+++++f++vhklFG+sn++kllk+l++++ r +a++s ++eA ++ +dP+ G +g +++l Rmu_sc0019694.1_g000003.1 17 ACAACRHQRKRCEEDCVMAPYFTADKEEEFKAVHKLFGVSNMSKLLKQLEDQNhRAQAVQSFIWEAYMWKQDPIAGPLGKYKAL 100 7**********************************************87776************************** PP DUF260 84 qqqleqlkaelall 97 +++ e l++ l++ Rmu_sc0019694.1_g000003.1 101 EEECEYLRNLLNSS 114 *99998877665 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MSIGSSNTGE PSGGRHACAA CRHQRKRCEE DCVMAPYFTA DKEEEFKAVH KLFGVSNMSK 60 LLKQLEDQNH RAQAVQSFIW EAYMWKQDPI AGPLGKYKAL EEECEYLRNL LNSSRPEQES 120 MGVVDQGNTK GEVEGGGVPI YGRGLNYGYA DQTLGLDHGC TTSFTSLLQG QDTESSKGLA 180 DCVSVASAYQ MPISQSQGRG FQDHRRIGME SFNFFHQYPT VQGANVHNYR PVQVQGRGRG 240 TGGIMIDCAR TCNGLVVYDP HTGQVQQREI GAMGPQVGPI LSSHRRGTSQ RFSPYDQLNP 300 IQVPRQAMRL QDQNQQSFPA QHQWDTNSQS CDNFQDAEHL NEVKNEKP

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MSIGSSNTGE PSGGRHACAA CRHQRKRCEE DCVMAPYFTA DKEEEFKAVH KLFGVSNMSK  60
LLKQLEDQNH RAQAVQSFIW EAYMWKQDPI AGPLGKYKAL EEECEYLRNL LNSSRPEQES  120
MGVVDQGNTK GEVEGGGVPI YGRGLNYGYA DQTLGLDHGC TTSFTSLLQG QDTESSKGLA  180
DCVSVASAYQ MPISQSQGRG FQDHRRIGME SFNFFHQYPT VQGANVHNYR PVQVQGRGRG  240
TGGIMIDCAR TCNGLVVYDP HTGQVQQREI GAMGPQVGPI LSSHRRGTSQ RFSPYDQLNP  300
IQVPRQAMRL QDQNQQSFPA QHQWDTNSQS CDNFQDAEHL NEVKNEKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-25	LBD family protein