PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0018174.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

E2F/DP

Protein Properties

Length: 722aa MW: 78908.8 Da PI: 6.1767

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0018174.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	85.4	4.3e-27	284	349	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r ++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg Rmu_sc0018174.1_g000003.1 284 RFDSSLGLLTKKFINLIKQAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 349 6789****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MVVWIATRCV GGRDLTKLGQ NLTHDEGWEQ MEDWAQTGLM GCGHLDRSLE GSTNNLGKSV 60 KWLTFNGGLN VGNEKEVAKS HMNAATVAPP IRTPTFGYVV LRVGWMRHLH LPPSRSLARS 120 SSSQSVTVRA GEILSMSGCA RAPNRQPGPP PPPATGGGSQ IVPPMRRHLV FESNKPPFFP 180 PADYHQFSGG AQRPADQEPE AIVVRSPQFI RKGAVDNNEA ENNDWTNSPG YNNMIQSPLQ 240 TPVSTTKAGK TNNRTKVSKG KSGPQTPASN AGSPCPLTPA GSCRFDSSLG LLTKKFINLI 300 KQAEDGILDL NKAAETLEVQ KRRIYDITNV LEGIGLIEKK LKNRIRWKGF DASRPGDLDA 360 DLSILQVLKF LYIAIKTVVV KGNSDNLARS SSSQSVTVRA GEILSMSGCA RAPNRQPGPP 420 PPPATGGGSQ IVPPMRRHLV FESNKPPFFP PADYHQFSGG AQRPADQEPE AIVVRSPGEV 480 ETLSLKERSL DDRIREMEEK LRDLSGDENN RKWLFVTEED IKGLPCFQNE TLIAIKAPHG 540 TTLEVPDPDE AVDYPQRRYR IILRSTMGPI DVYLVSQFEE KFDDINGVEP PVSFPIASGS 600 GSNEQSTTEM VNGQNRGKEI DPRAQQAQVD QTCSDVNASQ EFGGGMMRIV PSDVDNDADY 660 WLLSGVDVSI TDMWRTDSAI EWNGEDMLNA DFGLPDVSTP RPQTPPSGIV EVPSHAVNFS 720 QR

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MVVWIATRCV GGRDLTKLGQ NLTHDEGWEQ MEDWAQTGLM GCGHLDRSLE GSTNNLGKSV  60
KWLTFNGGLN VGNEKEVAKS HMNAATVAPP IRTPTFGYVV LRVGWMRHLH LPPSRSLARS  120
SSSQSVTVRA GEILSMSGCA RAPNRQPGPP PPPATGGGSQ IVPPMRRHLV FESNKPPFFP  180
PADYHQFSGG AQRPADQEPE AIVVRSPQFI RKGAVDNNEA ENNDWTNSPG YNNMIQSPLQ  240
TPVSTTKAGK TNNRTKVSKG KSGPQTPASN AGSPCPLTPA GSCRFDSSLG LLTKKFINLI  300
KQAEDGILDL NKAAETLEVQ KRRIYDITNV LEGIGLIEKK LKNRIRWKGF DASRPGDLDA  360
DLSILQVLKF LYIAIKTVVV KGNSDNLARS SSSQSVTVRA GEILSMSGCA RAPNRQPGPP  420
PPPATGGGSQ IVPPMRRHLV FESNKPPFFP PADYHQFSGG AQRPADQEPE AIVVRSPGEV  480
ETLSLKERSL DDRIREMEEK LRDLSGDENN RKWLFVTEED IKGLPCFQNE TLIAIKAPHG  540
TTLEVPDPDE AVDYPQRRYR IILRSTMGPI DVYLVSQFEE KFDDINGVEP PVSFPIASGS  600
GSNEQSTTEM VNGQNRGKEI DPRAQQAQVD QTCSDVNASQ EFGGGMMRIV PSDVDNDADY  660
WLLSGVDVSI TDMWRTDSAI EWNGEDMLNA DFGLPDVSTP RPQTPPSGIV EVPSHAVNFS  720
QR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.3	3e-84	E2F/DP family protein