PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0018004.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 323aa    MW: 37342.6 Da    PI: 4.9427
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0018004.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.41.3e-14131436128
                        NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvka.....eekewyfFskrdkkyatgkrknr.atks 80 
                                 FhPtd++lv  yL + +++ +   +++++e++iy +    Pwd+ + +++     +++ +yfFs+ +k  +  +  +r   + 
  Rmu_sc0018004.1_g000002.1  13 TFHPTDSDLVGSYLYNIIKSPTPIGKQTFPEIEIYGTtglPPWDIWR-IYEpskfpHQDYIYFFSRVKKLGS--RCFRRiGCDG 93 
                                5******************9995555678888887654448****63.222222334446688887766433..3344445679 PP

                        NAM  81 gyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                                g+W++t   k+v+++  +e  g  + + + ++ ++   +++ W+m+e+++
  Rmu_sc0018004.1_g000002.1  94 GTWSETEAAKPVYVSgIEEPYGKLRKFRYENNkDKGCEHHAAWLMDEFTI 143
                                **************8445568888889987541344456899******86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MNLEDLDVGA VKTFHPTDSD LVGSYLYNII KSPTPIGKQT FPEIEIYGTT GLPPWDIWRI  60
YEPSKFPHQD YIYFFSRVKK LGSRCFRRIG CDGGTWSETE AAKPVYVSGI EEPYGKLRKF  120
RYENNKDKGC EHHAAWLMDE FTINQAPDLA LCRLKVNDKG GGRKKRKKSS DETNEDENHR  180
KTMTFKNRKL EPKRVQVQNN MCEQQKGSAS FSSTSTTQQL PPQCDDHDYC VDENLVFSPT  240
GLVDDYHDIL NSDQFMASLD QWYEEQQQQF SDSSLLVPQQ QVEPNNSCEE QQQQQDEQKL  300
RPSLSLVHEQ QLCGDFDLMV YGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164168KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.12e-07NAC family protein