PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0017982.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Dof

Protein Properties

Length: 1143aa MW: 126137 Da PI: 9.1794

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0017982.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	73.3	2.6e-23	520	598	4	71
E2F_TDP 4 ksLrlltqkflklleksee.givtlnevakeLvse..............dvknkrRRiYDilNVLealnliekkekneirwkg 71 +Lr+++ +++k ++ g+ t+neva+e++se d+kn+rRR+YD+lNVL+a+++i+k ek++i+wkg Rmu_sc0017982.1_g000002.1 520 GGLRQFSAI---VCSKLKSkGRATYNEVADEIISElpgiygetealsefDEKNIRRRVYDALNVLMAMDIITK-EKKQIQWKG 598 69*****...9999*************************************************.*****98 PP
2	zf-Dof	121.7	2.6e-38	854	913	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+ss Rmu_sc0017982.1_g000002.1 854 EPALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSS 913 6789*****************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1143 aa Download sequence
MKRTSHNQPQ WLVILTATSA LLLLALLALT TTHAKYSSSS SSSSGPDFTY DHRRFPNPDQ 60 YFVDSDDDDE NYGLGLPRFA YLITGSKGDG PQLKRLLQAA YHPRNYYLLH LDLEASDAER 120 LELAKYVKSE SVMNAFRNAM VVGTADLVTA KGPTVLAATL HAVAILLKRA EDWDWFINLS 180 ASDYPLMSQD DLLHIFSYLP RDLNFLEHTS NIGWKENQRA RPIIIDPGLY HTKKSGVFWA 240 KERRSLPASF KLFMGSTGVV LTRSFLEFCV LGWDNLPRTL LMYYTNFLSS TEGYFHTVIC 300 NHKDYQNTTV NHDLHYIRWD SPPKLNPVNL TLEHYKDIIQ AGAPFASPFV RDDPVLDKID 360 KELLRRPSGH VTPGGWCLGS TGKDRCSVYG NPVAVKPTVV SKRLEKLIVK LLDSENFRSK 420 QWFPSSPLKH LAPQFSSFTS KLSSFQTVME FEYFGDSFGE LSRRNSSPIT PRSASASNAA 480 ASESVRSSSN SMTFHCDSTS TPDVDKNAGK KKRGSRYTAG GLRQFSAIVC SKLKSKGRAT 540 YNEVADEIIS ELPGIYGETE ALSEFDEKNI RRRVYDALNV LMAMDIITKE KKQIQWKGLP 600 DTNVIDLEGI KAQRVKLMGR IGAKEAYLKD LEEQMADLQN LMLRNKQLIK SGNSRHKGFS 660 FPFILAQTSN NATVEIEISE DMQLVHCDFN SYCGATNCQK VEMCLKVLQF TRLQVLAWLL 720 EAPDPFFGTL KQKLQNDEPD TELYKKAIYA TKSSSSSSSS LTIRKQQQHQ QLSAPSASAS 780 PATTAFKSWR WWQRAWRCGL DQAINNSQLH PLPPPPPPPP SNPGGGGSGP GGAGSIRPGS 840 MADRARMANI PMPEPALKCP RCESTNTKFC YFNNYSLTQP RHFCKTCRRY WTRGGALRNV 900 PVGGGCRRNK RSSKGGSSRS KSPVSSSDRP TGSASSSGQA IPSNSSTGTV DMIAAGLSPQ 960 IPPLRFINPF NDHHFAASEN LGLNYGMNYG GGGVGDLGFQ IGSGLGGGIT STPTGSLFEQ 1020 QWRFQQQTPS FPFLSGGLDP SPGLFEGSGV EFPGYNQVRP RLLSSGSSVG VSSQMASVKT 1080 EDPHHQNHQQ QEMNLSRQLL GIQGGNDSQY WINSGGNGNG TSTTAWTDLS GFSSTSTATN 1140 HPL

Sequence ? help Back to Top

Protein Sequence Length: 1143 aa Download sequence

MKRTSHNQPQ WLVILTATSA LLLLALLALT TTHAKYSSSS SSSSGPDFTY DHRRFPNPDQ  60
YFVDSDDDDE NYGLGLPRFA YLITGSKGDG PQLKRLLQAA YHPRNYYLLH LDLEASDAER  120
LELAKYVKSE SVMNAFRNAM VVGTADLVTA KGPTVLAATL HAVAILLKRA EDWDWFINLS  180
ASDYPLMSQD DLLHIFSYLP RDLNFLEHTS NIGWKENQRA RPIIIDPGLY HTKKSGVFWA  240
KERRSLPASF KLFMGSTGVV LTRSFLEFCV LGWDNLPRTL LMYYTNFLSS TEGYFHTVIC  300
NHKDYQNTTV NHDLHYIRWD SPPKLNPVNL TLEHYKDIIQ AGAPFASPFV RDDPVLDKID  360
KELLRRPSGH VTPGGWCLGS TGKDRCSVYG NPVAVKPTVV SKRLEKLIVK LLDSENFRSK  420
QWFPSSPLKH LAPQFSSFTS KLSSFQTVME FEYFGDSFGE LSRRNSSPIT PRSASASNAA  480
ASESVRSSSN SMTFHCDSTS TPDVDKNAGK KKRGSRYTAG GLRQFSAIVC SKLKSKGRAT  540
YNEVADEIIS ELPGIYGETE ALSEFDEKNI RRRVYDALNV LMAMDIITKE KKQIQWKGLP  600
DTNVIDLEGI KAQRVKLMGR IGAKEAYLKD LEEQMADLQN LMLRNKQLIK SGNSRHKGFS  660
FPFILAQTSN NATVEIEISE DMQLVHCDFN SYCGATNCQK VEMCLKVLQF TRLQVLAWLL  720
EAPDPFFGTL KQKLQNDEPD TELYKKAIYA TKSSSSSSSS LTIRKQQQHQ QLSAPSASAS  780
PATTAFKSWR WWQRAWRCGL DQAINNSQLH PLPPPPPPPP SNPGGGGSGP GGAGSIRPGS  840
MADRARMANI PMPEPALKCP RCESTNTKFC YFNNYSLTQP RHFCKTCRRY WTRGGALRNV  900
PVGGGCRRNK RSSKGGSSRS KSPVSSSDRP TGSASSSGQA IPSNSSTGTV DMIAAGLSPQ  960
IPPLRFINPF NDHHFAASEN LGLNYGMNYG GGGVGDLGFQ IGSGLGGGIT STPTGSLFEQ  1020
QWRFQQQTPS FPFLSGGLDP SPGLFEGSGV EFPGYNQVRP RLLSSGSSVG VSSQMASVKT  1080
EDPHHQNHQQ QEMNLSRQLL GIQGGNDSQY WINSGGNGNG TSTTAWTDLS GFSSTSTATN  1140
HPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	510	536	KKKRGSRYTAGGLRQFSAIVCSKLKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03415.1	1e-64	E2F/DP family protein