PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0017750.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 482aa MW: 54625.1 Da PI: 4.496

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0017750.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.6	2.4e-36	8	159	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........................kvkaeekewyf 60 +ppG+rFhPtde l+++ L+kk + k+ e++++i+e+d++k+eP++Lp+ + ++ +wyf Rmu_sc0017750.1_g000001.1 8 VPPGYRFHPTDEKLLSD-LEKKNQCKDSEITTIIPEIDVCKHEPRELPElaftraqnlgrkffsffffwfawaESWDSQGKWYF 90 69***********66.9*******999***********668999999999999999998875422235569* PP NAM 61 FskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 F++r+ ky+++kr+nr+t +g+Wk tgkd+++++ +++++g k+tL+fyk pk++kt Wv+he+ l Rmu_sc0017750.1_g000001.1 91 FTPREYKYPNSKRSNRTTGEGFWKITGKDRDIKAPgSKAVIGRKRTLTFYKRGVPKPQKTGWVIHEFYL 159 ********************************9666779***********************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MSYSDFTVPP GYRFHPTDEK LLSDLEKKNQ CKDSEITTII PEIDVCKHEP RELPELAFTR 60 AQNLGRKFFS FFFFWFAWAE SWDSQGKWYF FTPREYKYPN SKRSNRTTGE GFWKITGKDR 120 DIKAPGSKAV IGRKRTLTFY KRGVPKPQKT GWVIHEFYLI EAHSNPPKQI GDFVVCCLKY 180 KSDNSDHDKD APFFDRGSTS CSMASNVENQ AEENWALIEQ VNVVPMHNGN DDEAETGGGM 240 ITQEEEYLAL KELQDALQIP IGNPHEFQGT QTDPCRIDKN DLSTSVEGRP DKSNTSDVIE 300 EPLDNPENLD SIFDPPALPQ LHQLHQSPMY TTNDHNDECR KRTYPFEDND PSLTKKNSIS 360 TNDDDELVSN TASSPENQAA NMIPERYSQP GANLGSDYDS FLPKDYVYTL PSINGGPEDF 420 PHDSNFIEWD DLPSLYEGID YSPAKFSHTV IDGGRGVTSD GNTEVVDGSV LFCISHWSNA 480 PV

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MSYSDFTVPP GYRFHPTDEK LLSDLEKKNQ CKDSEITTII PEIDVCKHEP RELPELAFTR  60
AQNLGRKFFS FFFFWFAWAE SWDSQGKWYF FTPREYKYPN SKRSNRTTGE GFWKITGKDR  120
DIKAPGSKAV IGRKRTLTFY KRGVPKPQKT GWVIHEFYLI EAHSNPPKQI GDFVVCCLKY  180
KSDNSDHDKD APFFDRGSTS CSMASNVENQ AEENWALIEQ VNVVPMHNGN DDEAETGGGM  240
ITQEEEYLAL KELQDALQIP IGNPHEFQGT QTDPCRIDKN DLSTSVEGRP DKSNTSDVIE  300
EPLDNPENLD SIFDPPALPQ LHQLHQSPMY TTNDHNDECR KRTYPFEDND PSLTKKNSIS  360
TNDDDELVSN TASSPENQAA NMIPERYSQP GANLGSDYDS FLPKDYVYTL PSINGGPEDF  420
PHDSNFIEWD DLPSLYEGID YSPAKFSHTV IDGGRGVTSD GNTEVVDGSV LFCISHWSNA  480
PV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15170.1	7e-33	NAC family protein