PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0017253.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 282aa    MW: 32092.4 Da    PI: 4.5325
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0017253.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.81e-4081491128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...........kvkaeek.ewyfFskrdkkyatg 71 
                                +p+G++FhP+deel+++yL++k + k+ +++++i+e+d++k+eP++Lp +           +v+ +++ +wyfF++rd ky+++
  Rmu_sc0017253.1_g000004.1   8 VPKGYQFHPSDEELLSHYLEEKNQCKDSQITTIIPEIDVCKHEPHELPgNfffffffwfarEVSWDSQgKWYFFTPRDYKYNNS 91 
                                589***************************999***************54899**999887444344459************** PP

                        NAM  72 krknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +r+n +t +g+Wk tgkd+++++  +++++g k+tL+fyk   pk++kt+Wv+hey l
  Rmu_sc0017253.1_g000004.1  92 TRSNTTTGEGFWKITGKDRAIKAPgSKAVIGRKRTLTFYKRGVPKSQKTSWVIHEYYL 149
                                ***********************9666779**************************76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MSCGDFTVPK GYQFHPSDEE LLSHYLEEKN QCKDSQITTI IPEIDVCKHE PHELPGNFFF  60
FFFFWFAREV SWDSQGKWYF FTPRDYKYNN STRSNTTTGE GFWKITGKDR AIKAPGSKAV  120
IGRKRTLTFY KRGVPKSQKT SWVIHEYYLI QAHSDPPKQI GDFVVCCLKY KSDNSDYDKD  180
APFCDQGSSS CSMASNVENQ AEENRASEEL VNVVPIPSGN DDETGAGMIT EEEEYLTLEE  240
VEDILQIPIG NPHELEGTQT DPCHLDKNDL SSSVEGQADR SN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.13e-35NAC family protein