PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0017039.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family TCP
Protein Properties Length: 445aa    MW: 48226.9 Da    PI: 8.1966
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0017039.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.83.2e-37692312137
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasece 74 
                                 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++           s       +
  Rmu_sc0017039.1_g000003.1  69 SGGKDRHSKVWTSKGLRDRRVRLSVQTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAISELPSLnssfpdtpkqlS-------D 145
                                689*************************************************************543322222220.......2 PP

                        TCP  75 aesssssasnsssg.............................kaaksaakskksqksaasalnlakesrakarararertrek 129
                                +++ ss+      +                             +a++s+ +++k +   +  ++ ++  r kar+rarer +++
  Rmu_sc0017039.1_g000003.1 146 EKRASSE------RgfdsveldvdgdpnyhhqvqnhhqlcmskSACSSTSETSKGSGGLSLSRSEMRVNRDKARERARERAAKE 223
                                2222222......123334466666666666677788888876666666666666666666777777888*********66655 PP

                        TCP 130 mriknkln 137
                                + +++++n
  Rmu_sc0017039.1_g000003.1 224 KEKDSNSN 231
                                55554444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    
MEVEEIQAQQ PCKFPRTGNG GRGSTIVKSP DEEDDGGGRE LKRAGGGDAG TNRLNGWHHS  60
RIIRVSRASG GKDRHSKVWT SKGLRDRRVR LSVQTAIQFY DLQDRLGYDQ PSKAVEWLIK  120
AAADAISELP SLNSSFPDTP KQLSDEKRAS SERGFDSVEL DVDGDPNYHH QVQNHHQLCM  180
SKSACSSTSE TSKGSGGLSL SRSEMRVNRD KARERARERA AKEKEKDSNS NNDESSRIAQ  240
AISQSASFTE LLTGGIGNNR NNNSPNGEPI LFHKAAQPMD YFGSGLLGLS STPTRNHHQF  300
SGQIHLGNSL PQTMFSISGD HNHSHPEMQH FSFVPDYIPV VSAAANGGEY NLNFSMSSSG  360
GLAGFNRGTL QSNSSSSPSP SPSLLPHLQR FSPMDGSSSV PFFIGAAAAA AAPTMENHQH  420
HQFPAGLQLY GDGSRHSDHK GKAKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.15e-43TCP family protein