PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0016861.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 361aa MW: 41490.1 Da PI: 5.9295

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0016861.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178	2.6e-55	56	185	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksg 81 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++ +ee+ +wyfFs++dkky+tg+r+nrat++g Rmu_sc0016861.1_g000001.1 56 VPPGFRFHPTDEELVDYYLRKKVTARRIDL-DVIKDVDLYKIEPWDLQElcRIGTEEQsDWYFFSHKDKKYPTGTRTNRATAAG 138 69**************************.9***********954555554445********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +Wkatg+dk++++ k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Rmu_sc0016861.1_g000001.1 139 FWKATGRDKAIYA-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 185 *********.8899**************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MEGMEMVGTR NGDEVDDRAP MPHLCNYCRE DLQGHGGDGN GLNSEKLDNM NTFSHVPPGF 60 RFHPTDEELV DYYLRKKVTA RRIDLDVIKD VDLYKIEPWD LQELCRIGTE EQSDWYFFSH 120 KDKKYPTGTR TNRATAAGFW KATGRDKAIY AKHDLIGMRK TLVFYKGRAP NGQKSDWIMH 180 EYRLETDENG APQEEGWVVC RVFKKKLPSM RRMSEHESPC WYDEHVSFMP DLDSPNHNNS 240 NSSINNQMAY HGHFPNYPCK KELDHLPFQH HVPNEHFFQL PLLDSPKLLL QSSANAAVSS 300 NSMTAAAYSI DINQNFHAVY GNSSNELQAV DDDQLTDWRV LDKFVASQLS QDDVSKGNSY 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MEGMEMVGTR NGDEVDDRAP MPHLCNYCRE DLQGHGGDGN GLNSEKLDNM NTFSHVPPGF  60
RFHPTDEELV DYYLRKKVTA RRIDLDVIKD VDLYKIEPWD LQELCRIGTE EQSDWYFFSH  120
KDKKYPTGTR TNRATAAGFW KATGRDKAIY AKHDLIGMRK TLVFYKGRAP NGQKSDWIMH  180
EYRLETDENG APQEEGWVVC RVFKKKLPSM RRMSEHESPC WYDEHVSFMP DLDSPNHNNS  240
NSSINNQMAY HGHFPNYPCK KELDHLPFQH HVPNEHFFQL PLLDSPKLLL QSSANAAVSS  300
NSMTAAAYSI DINQNFHAVY GNSSNELQAV DDDQLTDWRV LDKFVASQLS QDDVSKGNSY  360
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-115	NAC family protein