PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0016842.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 297aa MW: 34497.7 Da PI: 8.9661

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0016842.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.7	8.9e-08	208	251	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ r RR++i ++ +eL +l+P K++ ae+L+ A +Y+k Lq Rmu_sc0016842.1_g000001.1 208 IAARERRRKITEKTQELGKLVPGG-----SKMNTAEMLTAAYNYVKFLQ 251 56799***************95.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MALNWEVPQF FDSDMTCIQQ NLEAELVGDF LQCVNSDYSN PHNFLDPWYD PCYLLNLENP 60 DFDHLLPPFS LKPDMFPVQD FEPYPQPKRQ KCSKEYYCRD LTPTFSNGIR RLLMAIPEKL 120 VLKMWGRKWK KEVYRRRVSR QEKGGGKSRR RLKSFPNPCA RPEFFSGAFT TPVLYFQHPE 180 VVDGNSRKTS VENVGKKVEE RSVSPQSIAA RERRRKITEK TQELGKLVPG GSKMNTAEML 240 TAAYNYVKFL QAQMGILEFM GSFQEMKADH TPTKELHVVA SPTIQEKLYL EHKCLVP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	152	RRRVSRQEKGGGKSRRRL
2	136	153	RRRVSRQEKGGGKSRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	2e-21	bHLH family protein