PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0016364.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 376aa MW: 43318.5 Da PI: 4.3995

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0016364.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	64	4.7e-20	15	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk..kvka.....eekewyfFskrdkkyatgkrknr 76 pG rF P ++elv +yLk+ ++g+ ++ + + ++d+y + ePw++ + k+k +k++yfF++++k ++t kr +r Rmu_sc0016364.1_g000001.1 15 LPGERFCPMEDELVLFYLKPMLSGQIVPGRNRvVFDCDLYGHqEPWEIWEafKTKRphdlrLNKDIYFFTQHKKMSSTTKRVRR 98 589*********************777554499*8879742422224333334588************** PP NAM 77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + sg+Wk k+v s +g++vglkk ++ + + + ++ W++ e+ l Rmu_sc0016364.1_g000001.1 99 NVGSGTWKGDDAGKPVRSVeTGRVVGLKKRYTYKN--DDSVHNGCWILYEFYL 149 ****9999999988768999****985..4445599****976 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MQKEFPMEES RGNQLPGERF CPMEDELVLF YLKPMLSGQI VPGRNRVVFD CDLYGHQEPW 60 EIWEAFKTKR PHDLRLNKDI YFFTQHKKMS STTKRVRRNV GSGTWKGDDA GKPVRSVETG 120 RVVGLKKRYT YKNDDSVHNG CWILYEFYLD QSLRDNKQKL EDYVLCLLRK NGEPKTKIEK 180 KRKQREEEEV LENNYAFDDG EKSKREQEEL LEPQAKRQRT VPSIGNAPLT MPSEDDAAFA 240 AELEESLECF EGGENGGLQQ LAAEVQSGPP FVDDHGIFNP LPEEDFLLAE MLEEMGMVNM 300 EELVLINGKS INIDVAAEEN VENSTLLSTP TSSMSLVEVS STVEQQKTAD EDWSDWLESI 360 NFSPEENNFL FSEMQW

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MQKEFPMEES RGNQLPGERF CPMEDELVLF YLKPMLSGQI VPGRNRVVFD CDLYGHQEPW  60
EIWEAFKTKR PHDLRLNKDI YFFTQHKKMS STTKRVRRNV GSGTWKGDDA GKPVRSVETG  120
RVVGLKKRYT YKNDDSVHNG CWILYEFYLD QSLRDNKQKL EDYVLCLLRK NGEPKTKIEK  180
KRKQREEEEV LENNYAFDDG EKSKREQEEL LEPQAKRQRT VPSIGNAPLT MPSEDDAAFA  240
AELEESLECF EGGENGGLQQ LAAEVQSGPP FVDDHGIFNP LPEEDFLLAE MLEEMGMVNM  300
EELVLINGKS INIDVAAEEN VENSTLLSTP TSSMSLVEVS STVEQQKTAD EDWSDWLESI  360
NFSPEENNFL FSEMQW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	183	PKTKIEKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	1e-13	NAC family protein