PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0014745.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 373aa MW: 40662 Da PI: 6.5151

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0014745.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.2e-13	308	353	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq Rmu_sc0014745.1_g000003.1 308 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 353 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MSSQGGDGGG TEEIVPHQKI VTDQQPQFLV PKVDNEAAMI QQQQQQQQQQ EQQQQQQQQS 60 HINNYTSQGF YQIPSSKPPL PNQNMASSSE GASAAAYPMG SNQLPPMKTG GVTHSNLVRH 120 SSSPAGLFAN INIDVAGYAA LRGMGNFGVS NSTNEEASFS PASRLKNFSS GPPPSTSGIM 180 SPISQIGEKR MRSNNQEPTG SGGRFSEGHS NNYVSSFPIG SWEDSSLLAD DIIGSTSFRD 240 DDDDVKTITG LSASETQNME ARSRPLAHHL SLPKTSAEMA AIENFLQFQD SVPCKIRAKR 300 GCATHPRSIA ERVRRTRISE RMRKLQELVP NMDKQTNTAD MLDLAVDYIK DLQTEVQTLS 360 EARAKCTCSI KQQ

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MSSQGGDGGG TEEIVPHQKI VTDQQPQFLV PKVDNEAAMI QQQQQQQQQQ EQQQQQQQQS  60
HINNYTSQGF YQIPSSKPPL PNQNMASSSE GASAAAYPMG SNQLPPMKTG GVTHSNLVRH  120
SSSPAGLFAN INIDVAGYAA LRGMGNFGVS NSTNEEASFS PASRLKNFSS GPPPSTSGIM  180
SPISQIGEKR MRSNNQEPTG SGGRFSEGHS NNYVSSFPIG SWEDSSLLAD DIIGSTSFRD  240
DDDDVKTITG LSASETQNME ARSRPLAHHL SLPKTSAEMA AIENFLQFQD SVPCKIRAKR  300
GCATHPRSIA ERVRRTRISE RMRKLQELVP NMDKQTNTAD MLDLAVDYIK DLQTEVQTLS  360
EARAKCTCSI KQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	2e-67	bHLH family protein