PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0014619.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | LBD | ||||||||
Protein Properties | Length: 110aa MW: 12715.8 Da PI: 9.9855 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 86.5 | 3.6e-27 | 7 | 107 | 2 | 100 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilkl 83 C++C++ r kC +dC lapyfpa+ ++k++ ++++FG ++kllk+l +++r++a++ + eA++r dPv G++gv+++ Rmu_sc0014619.1_g000001.1 7 CSSCRHNRIKCDPDCWLAPYFPAHMHQKYKKAQQVFGKIYMTKLLKSLhqTPNKRSTAIKNIRAEADIRSADPVGGCYGVVKEQ 90 **********************************************99666788****************************** PP DUF260 84 qqqleqlkaelallkee 100 +++l+ e+a ++ee Rmu_sc0014619.1_g000001.1 91 CAVIRRLEREIAGQEEE 107 *********99988776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence |
MKNPQTCSSC RHNRIKCDPD CWLAPYFPAH MHQKYKKAQQ VFGKIYMTKL LKSLHQTPNK 60 RSTAIKNIRA EADIRSADPV GGCYGVVKEQ CAVIRRLERE IAGQEEELRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 6e-24 | LBD family protein |