PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0014584.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 596aa    MW: 67609.1 Da    PI: 4.4545
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0014584.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.43.1e-11411655127
                        NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp.k....kvkaeekewyfFskrdkkya..tgkrknratks 80 
                                + F Ptd+ l+ + L+      + +   +i+++d++   ePw++  +      + + +e+yf +++ kk +   g+r nr++  
  Rmu_sc0014584.1_g000008.1  41 MSFIPTDSLLIRFILHD-----SAPN-FIITDCDLFGQeEPWEIWdRylgfLNQYNPDELYFIMPSLKKLSpnGGSRINRTIGG 118
                                45999999999554443.....3333.3699**9986549****6335654222355699***9998887643589******** PP

                        NAM  81 gyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                                g W ++   k v++   +g+ +g+k+ L +++  + + ++ +W+++ey+
  Rmu_sc0014584.1_g000008.1 119 GSWTQKEPIKFVCDDedEGRSIGVKRKLRYHN--QGSDQHVQWCLDEYT 165
                                *****9999999988778888**********4..4444689*******7 PP
2NAM37.28.9e-122033344127
                        NAM   4 Gfr..FhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk...kvkaeekewyfFskrdkkyatgkrk...nrat 78 
                                G++  F+Ptd++l+ ++L   ++ +      ++ ++d++   ePw++      v  +++ +yfF+++ kk  ++ r     r +
  Rmu_sc0014584.1_g000008.1 203 GMKilFRPTDSQLIRYFLGFDIAPDF-----IVYDCDLFGQeEPWEIWDrysVVFYNSDLLYFFTSSMKKLGSKGRVcnfGRRV 281
                                55444************998887654.....467899886549****63233222245567********999777651115668 PP

                        NAM  79 ksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyr 127
                                 sg+W+++   k v++       +++ +g k+ L + +  + + ++ +W ++ey+
  Rmu_sc0014584.1_g000008.1 282 GSGTWNQKEAAKLVYDDegeadqERKPIGRKRKLRYVN--QGSVHHGEWYLEEYT 334
                                8**************996666555555*********94..4455589*******7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    
MSISSSSYSG GFLTSEPSNS MVASSSSSGS VMPTLPLGMK MSFIPTDSLL IRFILHDSAP  60
NFIITDCDLF GQEEPWEIWD RYLGFLNQYN PDELYFIMPS LKKLSPNGGS RINRTIGGGS  120
WTQKEPIKFV CDDEDEGRSI GVKRKLRYHN QGSDQHVQWC LDEYTSVEVA NTCAIFRLRK  180
NERQYKSLCG ICVEDFIHPL PLGMKILFRP TDSQLIRYFL GFDIAPDFIV YDCDLFGQEE  240
PWEIWDRYSV VFYNSDLLYF FTSSMKKLGS KGRVCNFGRR VGSGTWNQKE AAKLVYDDEG  300
EADQERKPIG RKRKLRYVNQ GSVHHGEWYL EEYTSLVDEG AILLLRKNER YKAPASSMSS  360
GIPSEKKRKP REIDRLEEKK PRKKKASRQL VMQDSYLLNR QSQTTTSPTV PIQQREPGNG  420
DDNFVFFKGI DIGTWEFPSL DDFVMACPPP LTECDQEALA TLEFPSLDEF VMAYPPPLKD  480
CDQEALRTLE FPSPDDLASP SPPLDDCDQQ VIAAVNIDDN HDLTGSCNDD DIATWSFPIV  540
DYSLTSLLQG KCDEQALALV NSDDDLHFVK EDTGAWCPAF VDDFLMALLV DCDEQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366385KKRKPREIDRLEEKKPRKKK
2367386KKRKPREIDRLEEKKPRKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.22e-08NAC family protein