PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0014478.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 304aa    MW: 35281.7 Da    PI: 4.6349
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0014478.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.51.3e-19213211128
                        NAM  11 deelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk.....kvka....eekewyfFskrdkkyatgkrknratksgyW 83 
                                ++el+v+yLk+kv+g++++ + + i e+d+y + ePw++ +     +  a    ++k++yfF+k++k +a+ +r +r++ sg+W
  Rmu_sc0014478.1_g000004.1   2 EDELLVYYLKPKVNGEEVPGKGAlICELDLYgEQEPWNIWEryaarR--AndlrKNKDLYFFTKKKKVSAKASRISRKVGSGTW 83 
                                68999************9998888******93469****74344442..1345466799************************* PP

                        NAM  84 katgkdkevlskkgel......vglkktLvfykgrapkgektdWvmheyrl 128
                                k +   ke++  ++++       g kkt ++ +  +++ ++ +W+m e++l
  Rmu_sc0014478.1_g000004.1  84 KGQDAAKEIYLLDENQqptttlLGFKKTYTYKN--TSSVHHGRWIMYEFEL 132
                                **********98444445666699999999984..5555699*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MEDELLVYYL KPKVNGEEVP GKGALICELD LYGEQEPWNI WERYAARRAN DLRKNKDLYF  60
FTKKKKVSAK ASRISRKVGS GTWKGQDAAK EIYLLDENQQ PTTTLLGFKK TYTYKNTSSV  120
HHGRWIMYEF ELDESQLLHK QEQVNKNAYS LCLLRKNDIL PEQKKRKLRQ EEENQEMLQA  180
KKNVPAPSLL DFPQLEKWYD QQQFLLPDEP QPSEENLGQQ CQTPTLFSAN EIMSDQDKNQ  240
LQQMPAEEGI LTPGEVDLYG GNLSDVMVGA NWPDSFIGEL VKDDQPYTME EGEWNDFLVQ  300
ILST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.16e-14NAC family protein