PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0014221.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 263aa    MW: 31042.7 Da    PI: 8.0743
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0014221.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.12.3e-131150342
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               i n s r  tf kR +g+lKK +E+  LCd+++a +i+s+
  Rmu_sc0014221.1_g000005.1 11 IANASSRRNTFKKRNKGLLKKVYEITALCDIKAAAVIYSP 50
                               8999**********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MARRKLRLQY IANASSRRNT FKKRNKGLLK KVYEITALCD IKAAAVIYSP FEVEPKVFPS  60
HPEVRQMLTR FRDMPEMDKT RNMVNQETFL RQQIDKIQEK IIKLKRDNQE KQITQVMFDC  120
LKGKTLSDFE LKDLSDLTFI IEQNLKELDI KQQEENQLNQ VQATPATVEL NLTTMCAFGE  180
GSSRGVEQQQ HHIPIEVQSN ESMENMHYQM MQIEEQRQQQ MLQQQPWFMD IMNPPLPQKM  240
DFLHPLPPLP PRAFGDYNNR NDT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-33M-type_MADS family protein