PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0013987.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 399aa MW: 44615.4 Da PI: 6.6311

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0013987.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.1e-16	14	69	1	48
TSSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv++ ++ Gg+ +W+ +++ g++R++k+c++rw +yl Rmu_sc0013987.1_g000006.1 14 KGPWTAEEDEKLVEYMERCGGDgnhhrggiSWRQVPKLAGLKRCGKSCRLRWTNYL 69 79****************************************************97 PP
2	Myb_DNA-binding	51.6	2.2e-16	75	120	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++k+lG++ W+ Ia+ ++ gRt++++k++w+++l Rmu_sc0013987.1_g000006.1 75 RGNFSHQEEQTIINLHKLLGNK-WSEIASNLP-GRTDNEIKNFWNTHL 120 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MGRSACCDEN GLKKGPWTAE EDEKLVEYME RCGGDGNHHR GGISWRQVPK LAGLKRCGKS 60 CRLRWTNYLR PDIKRGNFSH QEEQTIINLH KLLGNKWSEI ASNLPGRTDN EIKNFWNTHL 120 KKKLLQMGID PVTHTPISAT HDHVSAIAAS TSFSPCDWAL LQYLNSKIQV LQNNILQGQG 180 LLISNNAGPN AYDQYRSCVL GMDMEAAAVN YYNNYVLGSS PSRSCSVPDQ QLLYHHGHGL 240 GYDYDDLTSA TMMNRHSSCL QGTSFGTSEY DHHDSKFAIP NMKVPFSTDD HHHKLQYGEA 300 GHHDHQLPVL VSAATSAYVT ITHDTTAAND QFATPYIPHQ FSNSTHSSTT TTTTSTTSST 360 ATFEIDHEVA CAGRDLIVMD DYHQEATNND QSYWKHIME

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MGRSACCDEN GLKKGPWTAE EDEKLVEYME RCGGDGNHHR GGISWRQVPK LAGLKRCGKS  60
CRLRWTNYLR PDIKRGNFSH QEEQTIINLH KLLGNKWSEI ASNLPGRTDN EIKNFWNTHL  120
KKKLLQMGID PVTHTPISAT HDHVSAIAAS TSFSPCDWAL LQYLNSKIQV LQNNILQGQG  180
LLISNNAGPN AYDQYRSCVL GMDMEAAAVN YYNNYVLGSS PSRSCSVPDQ QLLYHHGHGL  240
GYDYDDLTSA TMMNRHSSCL QGTSFGTSEY DHHDSKFAIP NMKVPFSTDD HHHKLQYGEA  300
GHHDHQLPVL VSAATSAYVT ITHDTTAAND QFATPYIPHQ FSNSTHSSTT TTTTSTTSST  360
ATFEIDHEVA CAGRDLIVMD DYHQEATNND QSYWKHIME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	4e-74	MYB family protein