PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0013725.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GeBP
Protein Properties Length: 314aa    MW: 36664.6 Da    PI: 4.7659
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0013725.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57351.72.4e-16106193698
                     DUF573   6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                                 ws++Deiv+L Gli+f+   g +     ++fye++k+++s +   +q+ +K+++L++K+ +++++    + ++  + ++ k+f
  Rmu_sc0013725.1_g000002.1 106 TWSKDDEIVILGGLISFQ---GDEREYKSKEFYEYIKSRLS-QGDLNQVRDKVKSLRRKYMGMQNQ-TFLETFQKGRYQEMKVF 184
                                5****************5...5445667899********98.56889******************9.566667777889999** PP

                     DUF573  90 elskkiWgs 98 
                                +lsk+ Wg+
  Rmu_sc0013725.1_g000002.1 185 NLSKIYWGK 193
                                *******95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MAFSSPFIVP DSPDQVKDAC DENEANSKDV IMSNKTTEQT KKKRKKKKKK TRLAEETKQV  60
DINGPEKENQ SDDEEQDPKN KRVKVAASPA PEENKSNTKS SCAGITWSKD DEIVILGGLI  120
SFQGDEREYK SKEFYEYIKS RLSQGDLNQV RDKVKSLRRK YMGMQNQTFL ETFQKGRYQE  180
MKVFNLSKIY WGKFDAADDD KLNNQKEETI LVQVADDEEE ENDEEEEEKE EETIQVKVAD  240
DEKMIDDDDQ SKPKISGFLR RGLRDHFRRE HFDRRWAEEQ DLEDLENKWK AYKIAEAESN  300
LAEAHFRKAL NCCT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14147KKKRKKK
24149KKKRKKKKK
34248KKKRKKK
44250KKKRKKKKK
54246KKRKK
64349KKKRKKK
74450KKKRKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.16e-11GeBP family protein