PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0013620.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 303aa    MW: 34393.2 Da    PI: 8.646
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0013620.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.62.7e-07262283223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                +C+ Cg sF+ + +Lk+H+++H
  Rmu_sc0013620.1_g000004.1 262 TCEECGASFKKPAYLKKHMQSH 283
                                6*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MAGLENDYVA SLRQADSTLV ALGDAGAAAF QDHHWYMVGR LLAPKAGFPG FKGTISNIWH  60
LRSGLTIQDA GERFVFQFEN ESVRNRIMHG GPWFYRNTML VVGDYDGLCP PETVALNMME  120
TWVVVRGLPL ALWNKVALNM VGATLGQVVR MDLTALKRKE EEQRIKIVFD VRRRIRSWKV  180
VEFSPVVRPE LTFIYEKVKG YCRDCGENQL RWGFIRKVYG ILSAQLLLTT DISFVTVLCT  240
PIKDEMEMAK VGGEVVVEKS NTCEECGASF KKPAYLKKHM QSHSPEVLCL LILFVYKDFM  300
RIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.29e-08C2H2 family protein