PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0013558.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 166aa    MW: 17514.3 Da    PI: 6.5663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0013558.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.36e-162069255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                               + kGVr++k +g+Wv+eIr+p   g +  r +lg+f tae Aa a++ a  +l++
  Rmu_sc0013558.1_g000006.1 20 KLKGVRQRK-WGKWVSEIRVP---G-TqDRLWLGSFSTAEAAAVARDVAYYCLRK 69
                               679*****9.**********8...3.35************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MSYSSEDSSS PTTTAGNGRK LKGVRQRKWG KWVSEIRVPG TQDRLWLGSF STAEAAAVAR  60
DVAYYCLRKP STLVGLNFPT ILPCSVNQAV DMSPRSIQKA ASDAGMAVDA QLINAYSNSS  120
SPQNGRQANG SEPRGTQGGG CWEDAGESSS ATTGGEALSI SIEDYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.12e-37ERF family protein