PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0013330.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 461aa MW: 50318.6 Da PI: 9.9019

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0013330.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Rmu_sc0013330.1_g000003.1 63 FICEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	12.9	0.00034	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Rmu_sc0013330.1_g000003.1 140 WKCEKCSKKYAVQSDWKAHSKTC 162 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MSGDGYSLIP SAMEGFDHQL NPANPSQKSN PVVKKKRNLP GTPDPDAEVI ALSPTTLMAT 60 NRFICEICNK GFQRDQNLQL HRRGHNLPWK LRQRTNKDVI KKKVYICPEK TCVHHDPSRA 120 LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK TCGTREYKCD CGTLFSRKDS 180 FITHRAFCDA LTEESARLTS AAAAATNLNF GNDPTVNNTM INSQAVQDVS QISDFDKPSR 240 LSFWLNQQPN NLNVMDMAAA NPNNLYEMVH MGSATSLFGS NSMSNFGAST STSSANLSLS 300 SPIGLKDQER RNIKANIISK PPAAPMSATA LLQKAAQLGS TRSSNQPLSG SSVGVMTSPS 360 SSNTMSFNSR SNELNQLFQS STTTSSNLVG SLSCSSNSLE QVMKFGGANS NAIDHQNSLT 420 RDFLGVGDRQ IHNRQFLPHE LAKFGSMSSA AMGLSPFTGN H

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MSGDGYSLIP SAMEGFDHQL NPANPSQKSN PVVKKKRNLP GTPDPDAEVI ALSPTTLMAT  60
NRFICEICNK GFQRDQNLQL HRRGHNLPWK LRQRTNKDVI KKKVYICPEK TCVHHDPSRA  120
LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK TCGTREYKCD CGTLFSRKDS  180
FITHRAFCDA LTEESARLTS AAAAATNLNF GNDPTVNNTM INSQAVQDVS QISDFDKPSR  240
LSFWLNQQPN NLNVMDMAAA NPNNLYEMVH MGSATSLFGS NSMSNFGAST STSSANLSLS  300
SPIGLKDQER RNIKANIISK PPAAPMSATA LLQKAAQLGS TRSSNQPLSG SSVGVMTSPS  360
SSNTMSFNSR SNELNQLFQS STTTSSNLVG SLSCSSNSLE QVMKFGGANS NAIDHQNSLT  420
RDFLGVGDRQ IHNRQFLPHE LAKFGSMSSA AMGLSPFTGN H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	9e-99	C2H2 family protein