PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0013280.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 613aa MW: 68746.8 Da PI: 7.2694

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0013280.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.2e-15	370	411	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T+eE+e +++++k G++ W++Ia+ ++ gRt++++k++w++ Rmu_sc0013280.1_g000006.1 370 TFTPEEEEHIINLHKAIGSR-WSLIAKQLP-GRTDNDVKNYWNT 411 79****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MDARFFLALS LCFFFFLFFF PHVSHSRARI SDVIPKKQTV GSLIRMKRGP SSATFDPSRV 60 SQLSWSPRAF IYKNFLSEEE CDHLINLAKD KLEVSMVADN DSGKSIKSEV RTSSGMFLSK 120 AQDEVVSNIE SKIAAWTFLP IENGEAMQIL HYENGQKYEP HFDYFHDKAN QELGGHRVAT 180 VLMYLSNVEK GGETVFPHAQ VKTVEAKDEV LSDCAKNGYS VKPFKGDALL FFSLLPNATT 240 DPNSLHGSCP VIEGEKWSAT KWIHVRSFED SIRQGTSGGC KDQNANCFTW AKAGECEKNP 300 VYMVGSEDLP GFCRKSCKPR MRNFLLAYPN MESEIGLWFL RKQVERLNRC GKSCRLRWTN 360 YLRPDLKHDT FTPEEEEHII NLHKAIGSRW SLIAKQLPGR TDNDVKNYWN TKLKKKLSKM 420 GIDPVTHKPI SQILSDYGNI TSLPKHIGNH FGPSFNNKLN MSTTFVPESD PSSGITGLAY 480 TNMMMMNPIM ESQDYSSTST LPFGFLSQFQ AMNQDDNVSL PPHFSNEVTS SCSSSSSPPA 540 TDLLSPQCHA SAQVVTPSSS PFNWSEFLLH DPFSSADQPK QEEVFQGLLA SPANPTVGNG 600 IQSQAFLRNF TSF

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MDARFFLALS LCFFFFLFFF PHVSHSRARI SDVIPKKQTV GSLIRMKRGP SSATFDPSRV  60
SQLSWSPRAF IYKNFLSEEE CDHLINLAKD KLEVSMVADN DSGKSIKSEV RTSSGMFLSK  120
AQDEVVSNIE SKIAAWTFLP IENGEAMQIL HYENGQKYEP HFDYFHDKAN QELGGHRVAT  180
VLMYLSNVEK GGETVFPHAQ VKTVEAKDEV LSDCAKNGYS VKPFKGDALL FFSLLPNATT  240
DPNSLHGSCP VIEGEKWSAT KWIHVRSFED SIRQGTSGGC KDQNANCFTW AKAGECEKNP  300
VYMVGSEDLP GFCRKSCKPR MRNFLLAYPN MESEIGLWFL RKQVERLNRC GKSCRLRWTN  360
YLRPDLKHDT FTPEEEEHII NLHKAIGSRW SLIAKQLPGR TDNDVKNYWN TKLKKKLSKM  420
GIDPVTHKPI SQILSDYGNI TSLPKHIGNH FGPSFNNKLN MSTTFVPESD PSSGITGLAY  480
TNMMMMNPIM ESQDYSSTST LPFGFLSQFQ AMNQDDNVSL PPHFSNEVTS SCSSSSSPPA  540
TDLLSPQCHA SAQVVTPSSS PFNWSEFLLH DPFSSADQPK QEEVFQGLLA SPANPTVGNG  600
IQSQAFLRNF TSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	6e-47	MYB family protein