PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0012999.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 745aa    MW: 81622.8 Da    PI: 6.4458
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0012999.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.23e-1273737322374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                 +lLl+cAeavs++++e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ + y++lp+s+++ ++s++ ++a+++f+
  Rmu_sc0012999.1_g000002.1 373 LTLLLQCAEAVSADNFEEATKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGFYASLPVSAAPITHSQKLVSAFQVFN 456
                                579********************************************************************************* PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169
                                 +sP++kfsh+taNqaI ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s ++le+tg+rL++fA
  Rmu_sc0012999.1_g000002.1 457 GISPFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMDALEATGKRLTDFA 536
                                ****************************************************************....**************** PP

                       GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                                ++lg+pfef + va+++ +l++++L+++++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sF
  Rmu_sc0012999.1_g000002.1 537 DKLGLPFEFFP-VAEKVGSLDPDRLNISKREAVAVHWLQ--HSLYDVTGSDAN----TLWLLQRLAPKVVTVVEQDLSH-AGSF 612
                                ***********.7*************************9..999999999999....**********************.899* PP

                       GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                                l rf+ea++yysalfdsl+a++++eseer++vE++ll+rei+nv+a  g +r  + + +++Wre+++++GF+ ++l  +aa+qa
  Rmu_sc0012999.1_g000002.1 613 LGRFVEAIHYYSALFDSLSASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEVK-FHNWREKFQQSGFRGISLAGNAATQA 695
                                ***************************************************888776.************************** PP

                       GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 lll +++sdgy++ e++g+l lgWkd  L+++SaWr
  Rmu_sc0012999.1_g000002.1 696 TLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWR 732
                                ************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    
MVRKRMASEI EVQPTNNTNP IRIGSSNNNG DNYMRVSRNR SVMLNPNPTH DKVNMVSNYS  60
TTMLNLPVPS SSNNLTTLMT SGGGGVLSTA SASSSPPSWG PIDPLSLHHP IHHTQIAATT  120
PPPAVCGFSG LPLFPPERTS PPTHTSTTLS TVMDQDSSAT AWIDGIIKDL IHSSTNVSIP  180
QLIQNVREII FPCNPNLASL LEYRLRSISE PPPPPIPLFN RRRDQGPGLQ LNLDSNSSGI  240
NDVTVFPSST TSGHSGHHHV MNQELFLNWG DTLPQQQQQQ PNPTSSPTCN ESNIQVQQHH  300
ISQVVHPQQQ TLDKQQQQQQ NSPSPAAEST QTTTAPPPPS TTAPATPSPA VLMREKKEEM  360
RQQKRDEEGL HLLTLLLQCA EAVSADNFEE ATKMLLEISE LSTPFGTSAQ RVAAYFSEAM  420
SARLVSSCLG FYASLPVSAA PITHSQKLVS AFQVFNGISP FVKFSHFTAN QAIQEAFERE  480
DRVHIVDLDI MQGLQWPGLF HILASRPGGP PYVRLTGLGT SMDALEATGK RLTDFADKLG  540
LPFEFFPVAE KVGSLDPDRL NISKREAVAV HWLQHSLYDV TGSDANTLWL LQRLAPKVVT  600
VVEQDLSHAG SFLGRFVEAI HYYSALFDSL SASYGEESEE RHVVEQQLLS REIRNVLAVG  660
GPSRSGEVKF HNWREKFQQS GFRGISLAGN AATQATLLLG MFPSDGYTLV EDNGTLKLGW  720
KDLCLLTASA WRPPYLATTN PNLHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein