PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0012945.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 245aa    MW: 27651.8 Da    PI: 8.1967
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0012945.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-174186148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  Rmu_sc0012945.1_g000002.1 41 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 86
                               89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MGFHSQSFRF EGGGRQIIGL NRTGKSCRLR WVNYLHPGLK RGKMTPQEER LVLELHSKWG  60
NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QEKKRAVSPS SSSSNCSSSS NITTNEGGAS  120
FYDTGGAEIV ASSAEKKNIN SGDQEKEDGN DTTKRDQKEY SLDDIWKDIN LPEVNSIEPV  180
YDGSYGEEVC KFSCPLMATP PPLSWDSLFK IDEDQESKNM FLPTTPSDNQ FLSCFEYGKA  240
SSLTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.43e-77MYB_related family protein