PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0012557.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 959aa MW: 109063 Da PI: 8.7811

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0012557.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.4	2.1e-22	67	152	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 Yn+YA + GFsv+k + ++ n+ i +r+f Cs+eg++++e+ + +++++ etr+gCka++ + dg w v++++++H Rmu_sc0012557.1_g000002.1 67 LYNTYALRKGFSVCKGHIRRDASNK-IRQRDFLCSNEGFTRDEDVC-QPNKHRKLETRVGCKAMISFIVK-DGIWTVSQINSDH 147 7***************9996665.************9999.99999***********999.********* PP FAR1 86 nHela 90 nHela Rmu_sc0012557.1_g000002.1 148 NHELA 152 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence
MRSKLFSGCC EELLEAEDDR YVDAGSIRRA PQAFLLCGSP RMEETIGDEE ELKVRMQVHS 60 DDESYNLYNT YALRKGFSVC KGHIRRDASN KIRQRDFLCS NEGFTRDEDV CQPNKHRKLE 120 TRVGCKAMIS FIVKDGIWTV SQINSDHNHE LAKPEERQFL RSGRKVTGAC GNIFTSMYDA 180 GIRPKKSFFY IANEVGGPEN VGCTKKEVYN YLQRKKNEML EAGDAQSLLN HFKHKQGEDP 240 NFFYSMQLDQ YSRMTNFFWR DSRAKLDYDC FRDVICFDTT FRTNKYNLIC APIVGVNHHW 300 RNVLFGCAFL LDETAESFVW LFESFLESMG NKAPKTIFTD EDKAMANAIE IVFPNACHRL 360 CTWHIAKNAS KRIGSYLGNL EFKKQFNHCL HGCSTEVEFR VSWDSMITRY NLGDHTWLTK 420 LYSLRQKWCP AFNLDIFSAK IRSTQRSEST NNVFHGISTH TMELIKFAHH YEKKIEENRL 480 AELEDDYRCK NGAPRPKVWS KMLRSAAKVY TNKMFQLFET EFYGCMGVRL KEVSSRDGVY 540 IYQAIEDGRQ SVHKIEYNST SLNINCSCKS FESLGILCHH ALKVFDTNNV TTLPTQYILK 600 RWTKEAKKGI VVSNNTCKGT SENSKSARVL HLSELMHEGN SVYDIASLTG SGTEIVKDLL 660 KEAMKRLEKD KDTIYVLENL KKLGDQSDSG IPSNEILVLN PPSAKTKGMK NARIKDKREI 720 NQRKKRTKEQ ESQENNDPKA PNHVSTSNHQ FGAAASDRNL VKVVRIPAIC DQTPAAGDRA 780 PAASDLMGER SHPPPCCASV TSGRRGLRRP ATGDRTLANG DRVPATAPPP LHRSHLQHRS 840 QPPAFRLPIQ PPHRSLPDFD LASKTLALTW RARSRILGGE GESEDGDGES ESGWGERVGE 900 EEEAVSWSRR KARKKKRRSQ TQRSPTTVAG GSDSNSDEGF PEARGGERLM GVERERERV

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence

MRSKLFSGCC EELLEAEDDR YVDAGSIRRA PQAFLLCGSP RMEETIGDEE ELKVRMQVHS  60
DDESYNLYNT YALRKGFSVC KGHIRRDASN KIRQRDFLCS NEGFTRDEDV CQPNKHRKLE  120
TRVGCKAMIS FIVKDGIWTV SQINSDHNHE LAKPEERQFL RSGRKVTGAC GNIFTSMYDA  180
GIRPKKSFFY IANEVGGPEN VGCTKKEVYN YLQRKKNEML EAGDAQSLLN HFKHKQGEDP  240
NFFYSMQLDQ YSRMTNFFWR DSRAKLDYDC FRDVICFDTT FRTNKYNLIC APIVGVNHHW  300
RNVLFGCAFL LDETAESFVW LFESFLESMG NKAPKTIFTD EDKAMANAIE IVFPNACHRL  360
CTWHIAKNAS KRIGSYLGNL EFKKQFNHCL HGCSTEVEFR VSWDSMITRY NLGDHTWLTK  420
LYSLRQKWCP AFNLDIFSAK IRSTQRSEST NNVFHGISTH TMELIKFAHH YEKKIEENRL  480
AELEDDYRCK NGAPRPKVWS KMLRSAAKVY TNKMFQLFET EFYGCMGVRL KEVSSRDGVY  540
IYQAIEDGRQ SVHKIEYNST SLNINCSCKS FESLGILCHH ALKVFDTNNV TTLPTQYILK  600
RWTKEAKKGI VVSNNTCKGT SENSKSARVL HLSELMHEGN SVYDIASLTG SGTEIVKDLL  660
KEAMKRLEKD KDTIYVLENL KKLGDQSDSG IPSNEILVLN PPSAKTKGMK NARIKDKREI  720
NQRKKRTKEQ ESQENNDPKA PNHVSTSNHQ FGAAASDRNL VKVVRIPAIC DQTPAAGDRA  780
PAASDLMGER SHPPPCCASV TSGRRGLRRP ATGDRTLANG DRVPATAPPP LHRSHLQHRS  840
QPPAFRLPIQ PPHRSLPDFD LASKTLALTW RARSRILGGE GESEDGDGES ESGWGERVGE  900
EEEAVSWSRR KARKKKRRSQ TQRSPTTVAG GSDSNSDEGF PEARGGERLM GVERERERV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	713	725	RIKDKREINQRKK
2	910	918	RKARKKKRR
3	912	920	ARKKKRRSQ
4	914	918	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-125	FAR1 family protein