PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0012466.1_g000002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 23351.6 Da PI: 7.8822 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.7 | 2e-29 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +l++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+ Rmu_sc0012466.1_g000002.1 2 SCNGCRVLRKGCSETCILRSCLrlidcPESQGNATLFLAKFFGRSDLLSFISAVPENQRPALFQSLLFEACGRTVNPVSGAVGL 85 6*********************************************************************************** PP DUF260 80 ilklqqqleqlkaelal 96 ++++++++++++++++l Rmu_sc0012466.1_g000002.1 86 LSSGNWHVCHAAVQTVL 102 **********9998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MSCNGCRVLR KGCSETCILR SCLRLIDCPE SQGNATLFLA KFFGRSDLLS FISAVPENQR 60 PALFQSLLFE ACGRTVNPVS GAVGLLSSGN WHVCHAAVQT VLSGGVLRPL PAISTPKLEE 120 SSVTFDRGAC GIQDLHYTSV PSMFYDDVER SQPLDVALSL KPNLSAAAAG GRGRARGRSC 180 AIERSMRDTV SFNSEDSIMT TSAGGGDSNG DRKLLNLFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 3e-61 | LBD family protein |