PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0012301.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 461aa MW: 50717.8 Da PI: 7.285

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0012301.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.5e-31	103	160	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ +++++ei+Y+g+H+h+k Rmu_sc0012301.1_g000009.1 103 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-EGHITEIIYKGTHDHPK 160 8**************************************.*************85 PP
2	WRKY	106.7	1.2e-33	278	336	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Rmu_sc0012301.1_g000009.1 278 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 336 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MCFKILAEVT TDYDRQSNEQ AVQVQGQGQG QSQSLASPPL VKSEMAGSSN QSGLPAPVHM 60 VSSGASAPVE GDADDISQRA NPNSGVQTSQ FDHKGSGPSV SSDDGYNWRK YGQKHVKGSE 120 FPRSYYKCTH PNCEVKKLFE RSHEGHITEI IYKGTHDHPK PQPSRRYNTG AMMNVQEERS 180 DKALSLTGRD DKSSSMYGQM SCTNEPNSTP ELSPVRGNDG SVEGTGSLST RILDEVDDDD 240 PFSKRRRMDV GGIDVTPVVK PIREPRVVVQ TLSEVDILDD GYRWRKYGQK VVRGNPNPRS 300 YYKCTNAGCP VRKHVERASH DPKAVITTYE GKHNHDVPTA RTSSHDTSGP TTVNAPSRIR 360 TEENDTISLD LGVGMSSATE NRSNNHLRLH SELAERQTHP SSNFKAVQTT PAPSYYGVLN 420 SGMNQYGSRE NPSESRSIEI PPLNHSSYPY PQNMGRVLTG P

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MCFKILAEVT TDYDRQSNEQ AVQVQGQGQG QSQSLASPPL VKSEMAGSSN QSGLPAPVHM  60
VSSGASAPVE GDADDISQRA NPNSGVQTSQ FDHKGSGPSV SSDDGYNWRK YGQKHVKGSE  120
FPRSYYKCTH PNCEVKKLFE RSHEGHITEI IYKGTHDHPK PQPSRRYNTG AMMNVQEERS  180
DKALSLTGRD DKSSSMYGQM SCTNEPNSTP ELSPVRGNDG SVEGTGSLST RILDEVDDDD  240
PFSKRRRMDV GGIDVTPVVK PIREPRVVVQ TLSEVDILDD GYRWRKYGQK VVRGNPNPRS  300
YYKCTNAGCP VRKHVERASH DPKAVITTYE GKHNHDVPTA RTSSHDTSGP TTVNAPSRIR  360
TEENDTISLD LGVGMSSATE NRSNNHLRLH SELAERQTHP SSNFKAVQTT PAPSYYGVLN  420
SGMNQYGSRE NPSESRSIEI PPLNHSSYPY PQNMGRVLTG P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.1	1e-173	WRKY family protein