PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0012200.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 241aa    MW: 27613 Da    PI: 6.3095
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0012200.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.17.7e-35221132102
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl k+y ++ed++++++isw+e+g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF +++
  Rmu_sc0012200.1_g000006.1  22 FLLKTYMLVEDPATDDVISWNEDGSAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDK 96 
                                9****************************************************************999.........******* PP

                                XXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                                F+kg+k++l++i+r+k 
  Rmu_sc0012200.1_g000006.1  97 FRKGEKDHLCEIRRRKA 113
                                **************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MEGVCDQKGL LEYVRKSSPP PFLLKTYMLV EDPATDDVIS WNEDGSAFVV WQPAEFARDL  60
LPTLFKHSNF SSFVRQLNTY GFRKVATSRW EFCNDKFRKG EKDHLCEIRR RKAWANKQQP  120
NAALAQGQAA AEDDQSDEDH ERSSSTSSSS EYSSLIDENK RLKMENGVLS CELTSMKNKC  180
KELLDLVAKY GRDSERGKEE DDQRPKLFGV RLEVEGERER KRKRAEILSE SASILLSQAC  240
K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-57HSF family protein