PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0011792.1_g000005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 352aa MW: 37488.4 Da PI: 8.1583 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 3.8e-18 | 47 | 94 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl Rmu_sc0011792.1_g000005.1 47 RGPWTPEEDELLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 94 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46 | 1.2e-14 | 105 | 145 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Rmu_sc0011792.1_g000005.1 105 ADEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 145 79***************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence |
MRNPSSTSSS SKGKSSSSAA AAAAPKTAAV SSSSSKTPCC VKVGLKRGPW TPEEDELLAN 60 YIKKEGEGRW RTLPKRAGLL RCGKSCRLRW MNYLRPSVKR GQIAADEEDL ILRLHRLLGN 120 RWSLIAGRIP GRTDNEIKNY WNTHLSKKLI SQGIDPRTHK PLNPDTSSAD HAAVNNNGAA 180 ASSSKTNQHR GGTSSNPSPK SPITSSSPEE AAPSARENGY HVTNDDDLGA IVHGANGYGN 240 VMTSNDSNGS AAGMGGLRSN LLIGNEEDED MNCCTDDVFS SFLNSLINED PFAAAAAGQH 300 HSQPLQGMQH PNGIAPPADS SAQAFGGWES AVLMSSSFIQ NDSHRVNVDQ TQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-79 | MYB family protein |