PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0011258.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 466aa MW: 51993.9 Da PI: 4.7402

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0011258.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	76.5	6.1e-24	9	125	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 +G+rFhP+deel+++yL++k + k+ +++++i+e+d++k+eP++Lp k + e e + F + +++r Rmu_sc0011258.1_g000006.1 9 LKGYRFHPSDEELLSHYLEQKNKCKDSQITTIIPEIDVCKHEPRELPDKP-SPEPEHHQFQLLMIMIR---KPSRELP------ 82 58*************************999***********543.45668888888776654...5677544...... PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 kd++++++ +++++g k+tL+fyk pk++kt+Wv+hey l Rmu_sc0011258.1_g000006.1 83 -SKDRAIKASgSKAVIGRKRTLTFYKRGVPKSQKTSWVIHEYYL 125 .789999988566679************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MCCGGFTVLK GYRFHPSDEE LLSHYLEQKN KCKDSQITTI IPEIDVCKHE PRELPDKPSP 60 EPEHHQFQLL MIMIRKPSRE LPSKDRAIKA SGSKAVIGRK RTLTFYKRGV PKSQKTSWVI 120 HEYYLIQAHS DPPKQIGDFV VCCLQYKSDN FDHDKDAPFC DRGSSSCSMA SNVVNQAQEN 180 WASKELANVV PIPSGNDEEA ETGGGMITEE EEYLTLKELR DALQIPIGNP HEFEVQGTQT 240 DPCPIDKNDL STTVEGQPDR SNSSDMIKEL LDDPENLDSL FHQPAPPQLH NSPMYTTNVH 300 NNECRKRTCP FEDNNPSLTK KNIISTNDDD ELVSNTTCGS ENKAANMIPE GYSQLGANLG 360 LEFDSFLPND YDYTLPSING GLRDFSQDNN FIELDDLLSS YEGIDSSLAQ FLHTVIDGGR 420 GVTSDRNTEV VHGSAVRLQG HCTAVYLPQK KLKVLEADNS SKLAAI

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MCCGGFTVLK GYRFHPSDEE LLSHYLEQKN KCKDSQITTI IPEIDVCKHE PRELPDKPSP  60
EPEHHQFQLL MIMIRKPSRE LPSKDRAIKA SGSKAVIGRK RTLTFYKRGV PKSQKTSWVI  120
HEYYLIQAHS DPPKQIGDFV VCCLQYKSDN FDHDKDAPFC DRGSSSCSMA SNVVNQAQEN  180
WASKELANVV PIPSGNDEEA ETGGGMITEE EEYLTLKELR DALQIPIGNP HEFEVQGTQT  240
DPCPIDKNDL STTVEGQPDR SNSSDMIKEL LDDPENLDSL FHQPAPPQLH NSPMYTTNVH  300
NNECRKRTCP FEDNNPSLTK KNIISTNDDD ELVSNTTCGS ENKAANMIPE GYSQLGANLG  360
LEFDSFLPND YDYTLPSING GLRDFSQDNN FIELDDLLSS YEGIDSSLAQ FLHTVIDGGR  420
GVTSDRNTEV VHGSAVRLQG HCTAVYLPQK KLKVLEADNS SKLAAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	6e-20	NAC family protein