PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0011258.1_g000003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 223aa MW: 25488.9 Da PI: 4.5772 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 50.3 | 7.8e-16 | 7 | 73 | 52 | 128 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +a++ e +fF+++ ky++++r+nr+tk+gyWk tgk+ g k+tL+fy+ r pk+++t+Wv+hey l Rmu_sc0011258.1_g000003.1 7 EAQDMERFFFTRKYYKYNKSSRSNRSTKKGYWKITGKE----------RGNKRTLTFYQDRVPKSNETSWVIHEYYL 73 5577899****************************993..........5899***********************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MLGTDTEAQD MERFFFTRKY YKYNKSSRSN RSTKKGYWKI TGKERGNKRT LTFYQDRVPK 60 SNETSWVIHE YYLPGNGVIS YLKQAQGDFV ICHLMIKSDK KDSSRSNEGE PGNAGVSNCE 120 NQAADEMDQE GREELLFHQP QPQGDRCFSA LWSRASHELE AVPQTNSTND DCNELESPFG 180 DGDSCFLDWN EVSTCDEYEI VYDVSPQLCD PPEKNSGFTL TST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01550.1 | 8e-13 | NAC family protein |