PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0011183.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 704aa    MW: 77665.4 Da    PI: 7.1301
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0011183.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.24.9e-1093367042374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                 ++Ll+cA++++s + e+a + L rl+e +s++gdp++R+a++ft AL +r++  ++e ++a    +     +++ + ++k+++
  Rmu_sc0011183.1_g000004.1 336 LKALLDCARVIES-EPERAIKSLVRLRESVSEHGDPTERVAFHFTDALYSRVSPPQPEKSSASYDAS----CEEDFTLSYKALN 414
                                689******9998.6788888999******************************5555554332222....37899999***** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLa 166
                                +++P+ kf+hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g   + +l +tg+rL 
  Rmu_sc0011183.1_g000004.1 415 DACPYSKFAHLTANQAILEATERATKIHIVDFGIVQGVQWAALLQALATRSTGKPsKIRISGIPAPSLGnsPAASLVATGNRLG 498
                                ***************************************************666659*********99988999********** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                +fA+ l+++f f++ v + +++l+ + +rv+p+E laVnl+lqlh+lldes++  +   + L+l ksl+Pk+v++ e ea++n+
  Rmu_sc0011183.1_g000004.1 499 EFAKLLELNFAFEP-VLTPIQELNESCFRVDPDEFLAVNLMLQLHNLLDESTTGVE---AALRLAKSLNPKIVTLGEYEAKLNR 578
                                **************.799******************************99999888...9************************ PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplseka 333
                                  F+ rf  al+yy+a+f+sle +++r+s er  vEr llgr+i   v  e+   +r+r e +e+W+  +e++GF+pv+ls++a
  Rmu_sc0011183.1_g000004.1 579 VGFMSRFKTALKYYTAMFESLEPNMSRDSPERLQVERLLLGRRIAGGVGPEEPGtKRQRLEDKEQWKFLMESSGFEPVALSHYA 662
                                *************************************************99886699*************************** PP

                       GRAS 334 akqaklllrkvksdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                ++qa+ ll ++++  y++ e+   ++ l Wk+ pL++vS+Wr
  Rmu_sc0011183.1_g000004.1 663 VSQARILLWNYSNASYSLIESPPGFLsLAWKEVPLFTVSSWR 704
                                ************999999888666666**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    
MWHTPLHILL SSRQVSGTRT HRVQTKWWRF KVKRSQFPLP RKVTPTDGCD PLSSSRKDHS  60
TPPMTSGSAP HHRSVIPRVF PARFGRRMAY MCTDSGNLMA IAQQVIKQKQ QQEQQQQQHS  120
HHHHHQLTSA FSLSSAPWPT NTHHAPTLGY GLGGSSFSDP FQLPGSSDTT VGEPGFPFPN  180
MDHHPTSSGF RFSDLGGAAE FDSDEWMDSI IGGGDSTDSS NLPSVCDAWQ NNAADFGLYA  240
SDPFAPCPSR LSAPCSSPSD LNRVIYSDVH NQKTANLQPQ LPPAWTPPPP PPQQQQQQPS  300
SIAVKDAKSA NPTPQNNDAV GVSSRSPEIE SAPPLLKALL DCARVIESEP ERAIKSLVRL  360
RESVSEHGDP TERVAFHFTD ALYSRVSPPQ PEKSSASYDA SCEEDFTLSY KALNDACPYS  420
KFAHLTANQA ILEATERATK IHIVDFGIVQ GVQWAALLQA LATRSTGKPS KIRISGIPAP  480
SLGNSPAASL VATGNRLGEF AKLLELNFAF EPVLTPIQEL NESCFRVDPD EFLAVNLMLQ  540
LHNLLDESTT GVEAALRLAK SLNPKIVTLG EYEAKLNRVG FMSRFKTALK YYTAMFESLE  600
PNMSRDSPER LQVERLLLGR RIAGGVGPEE PGTKRQRLED KEQWKFLMES SGFEPVALSH  660
YAVSQARILL WNYSNASYSL IESPPGFLSL AWKEVPLFTV SSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein