PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0011154.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 733aa MW: 80128.4 Da PI: 7.8295

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0011154.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.4	6.4e-19	174	274	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v Rmu_sc0011154.1_g000008.1 174 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIV 256 89************************555566778***********99899999999.************** PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 +F++ + +++lv++ +r+ Rmu_sc0011154.1_g000008.1 257 TFSRLE-PGGKLVMGCRRA 274 *665.777777777775 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MGINNKLNAG ERVSVHPLEK KKAEDFSERL MKVNLAIGTP VSFENGNSGN KCMEQSSSCL 60 NISQQPASLK EEPSTPQFVL SVPYVSASET NGQTNGQVVV TGTNLRPALP MVKQFNGTLH 120 NGVELSGDTQ IRNARPRADA RGRSPLLPRY WPRFTDQELQ QMSGDSNSVI TPLFEKMLSA 180 SDAGRIGRLV LPKKCAEAYF PPISQPEGLP LKVQDSKGKE WVFQFRFWPN NNSRMYVLEG 240 VTPCIQSMQL QAGDIVTFSR LEPGGKLVMG CRRASTAPSD QENDTNKMGN GVSAHVDVSI 300 TDTKSGEVFS NAELADPSTF PKGDKSSYIS REVEGAKSLI SRKRKNSNLG SKSKRLRIEK 360 EDLIELKITW EEAQGLLRPP PNHVPTVVVI EGFEFEEYED GPILGKPTLY ATGSKGEKIQ 420 WAQCEVCCKW RKLPVNALLP SKWTCSDNSW DPDRSLCSAA QELTTEQLED LLPGCNLVAP 480 KKIKAAKQDP DNIEALEGLD TLANLAILGE GESLPASAQA TTKHPRHRPG CSCIVCIQPP 540 SGKGPKHKQT CICNVCSTVK RRFRTLMMRR EKNKSEKEAE TTRKKQQQQQ LLDDETLLCG 600 NAGSSSPNNK VEVLELSDDD FNRTKSPTPP YKGQIDLNIQ PEREEDLSPG SDSGGVIKLL 660 QDATERYLRQ QRQSLSTSGG GERSMGNKSQ RAGGEAGGEP LGNIAILGNS NHDSGNDHPA 720 TLSVKASASM TAT

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MGINNKLNAG ERVSVHPLEK KKAEDFSERL MKVNLAIGTP VSFENGNSGN KCMEQSSSCL  60
NISQQPASLK EEPSTPQFVL SVPYVSASET NGQTNGQVVV TGTNLRPALP MVKQFNGTLH  120
NGVELSGDTQ IRNARPRADA RGRSPLLPRY WPRFTDQELQ QMSGDSNSVI TPLFEKMLSA  180
SDAGRIGRLV LPKKCAEAYF PPISQPEGLP LKVQDSKGKE WVFQFRFWPN NNSRMYVLEG  240
VTPCIQSMQL QAGDIVTFSR LEPGGKLVMG CRRASTAPSD QENDTNKMGN GVSAHVDVSI  300
TDTKSGEVFS NAELADPSTF PKGDKSSYIS REVEGAKSLI SRKRKNSNLG SKSKRLRIEK  360
EDLIELKITW EEAQGLLRPP PNHVPTVVVI EGFEFEEYED GPILGKPTLY ATGSKGEKIQ  420
WAQCEVCCKW RKLPVNALLP SKWTCSDNSW DPDRSLCSAA QELTTEQLED LLPGCNLVAP  480
KKIKAAKQDP DNIEALEGLD TLANLAILGE GESLPASAQA TTKHPRHRPG CSCIVCIQPP  540
SGKGPKHKQT CICNVCSTVK RRFRTLMMRR EKNKSEKEAE TTRKKQQQQQ LLDDETLLCG  600
NAGSSSPNNK VEVLELSDDD FNRTKSPTPP YKGQIDLNIQ PEREEDLSPG SDSGGVIKLL  660
QDATERYLRQ QRQSLSTSGG GERSMGNKSQ RAGGEAGGEP LGNIAILGNS NHDSGNDHPA  720
TLSVKASASM TAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-157	B3 family protein