PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0011151.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 614aa MW: 69069 Da PI: 7.2397

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0011151.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	446	469	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C+ksF + L++H + H Rmu_sc0011151.1_g000006.1 446 FSCGSCSKSFGSDGALQSHNKAkH 469 89*****************88766 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
LCGLKKGDIV ELTQCPRSWG KGFEIDQIEP LENYPKVLIF TPGSRISPIM SLIESGFNVD 60 RGFDVKLFYE ARNLAKMQPL MRAFDLFMYR VVLMKCCADW NPFASWSIAE LLCGLKKGDI 120 VELTQCPRSW GKGFEIDQIE PLENYPKVLI FTPGSRISPI MSLIESGFNV DRGFDVKLFY 180 EARNLAKMQP LMRAFDLFMY RVVLMKCCAD WVCNFDVCIQ YMLSGESKKA ADSIVIYGKI 240 REQKLVLGHL IPSQIPQLSF DLVFDDEFEL SHNWKSEFES ESEEEEEELP MIAAENGKVE 300 NAKPAIAKSN AVKPESSGKQ KVKIEEPIKV VADEDDSASD MDDSDDLLDE DDSSDDDDDE 360 SEDDSDEEDE ETPTPKKPES KKRAQVSGSV KTPVSAKKAK IVTSTPQKTD GKKGGHTDTP 420 HPAKKGKTPA TDKSKTQTPK SAGGNFSCGS CSKSFGSDGA LQSHNKAKHK TTTSSHHPFS 480 NPKLHIILLP PNPIRKEPKG LPYKLEGLVG AQMGVLIRGS TWRILYQLGG FGVAFLWAVR 540 RISKAVAMEE TPSRFGLRRA REHRSLGPIK LRAQRPNWGV WRVRLEMGPI PRCKRSVASF 600 WVDNLRLWER NRHW

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

LCGLKKGDIV ELTQCPRSWG KGFEIDQIEP LENYPKVLIF TPGSRISPIM SLIESGFNVD  60
RGFDVKLFYE ARNLAKMQPL MRAFDLFMYR VVLMKCCADW NPFASWSIAE LLCGLKKGDI  120
VELTQCPRSW GKGFEIDQIE PLENYPKVLI FTPGSRISPI MSLIESGFNV DRGFDVKLFY  180
EARNLAKMQP LMRAFDLFMY RVVLMKCCAD WVCNFDVCIQ YMLSGESKKA ADSIVIYGKI  240
REQKLVLGHL IPSQIPQLSF DLVFDDEFEL SHNWKSEFES ESEEEEEELP MIAAENGKVE  300
NAKPAIAKSN AVKPESSGKQ KVKIEEPIKV VADEDDSASD MDDSDDLLDE DDSSDDDDDE  360
SEDDSDEEDE ETPTPKKPES KKRAQVSGSV KTPVSAKKAK IVTSTPQKTD GKKGGHTDTP  420
HPAKKGKTPA TDKSKTQTPK SAGGNFSCGS CSKSFGSDGA LQSHNKAKHK TTTSSHHPFS  480
NPKLHIILLP PNPIRKEPKG LPYKLEGLVG AQMGVLIRGS TWRILYQLGG FGVAFLWAVR  540
RISKAVAMEE TPSRFGLRRA REHRSLGPIK LRAQRPNWGV WRVRLEMGPI PRCKRSVASF  600
WVDNLRLWER NRHW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	1e-08	C2H2 family protein