PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0011039.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 492aa MW: 55807.8 Da PI: 5.3568

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0011039.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.1	6.5e-13	8	61	44	97
-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 44 rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +W v l+y+ ++++ +++GW +Fv++n+Lk gD +vF l+++++f++ v ++ Rmu_sc0011039.1_g000006.1 8 TTWHVGLKYDVGRKGAKFQSGWTKFVRDNNLKKGDECVFVLTDENKFSFEVVII 61 69***************************************9999998888776 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
LHVPGGRTTW HVGLKYDVGR KGAKFQSGWT KFVRDNNLKK GDECVFVLTD ENKFSFEVVI 60 IAAKSTLPPD IDDANDNIKD DEDGKNEDDT SDDEGDDYDD DNDHSDEDED NEYSSAQQLH 120 KRKRSSSSTK SSIKDVGAWT SSGQFLKRRP GVPRSIHPIR ATKNDIALQE AEDFKYVEPH 180 FVVPMTPTNV RKSFLKLPSV FVEKNLDKRP SHVSLWGSND IYWPVELHFS KGASFQAGDD 240 YDDDNAHNDE EEDEDEDIEY SSAQQLHKRK RLSSSTKSSI KDVGASTSIG QFLKGRPGVP 300 RNLHSIRDTV NDIALQRATA FKYVKPHSDV PRGMNPMMAR GENTALRRAE VFCSVQPYFL 360 QAMHHRDVHA PFLVFFPSLD DSAQQSIFCL DVSTAVNVER LEQTHSLLQI NIIDIPSEVF 420 TCSRLLLSFT LSLFRFQELP FDFAENHLDK RPSHVKLQGS NGESWSVKLY FANELAGFQD 480 GWIEFVHGQN FK

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

LHVPGGRTTW HVGLKYDVGR KGAKFQSGWT KFVRDNNLKK GDECVFVLTD ENKFSFEVVI  60
IAAKSTLPPD IDDANDNIKD DEDGKNEDDT SDDEGDDYDD DNDHSDEDED NEYSSAQQLH  120
KRKRSSSSTK SSIKDVGAWT SSGQFLKRRP GVPRSIHPIR ATKNDIALQE AEDFKYVEPH  180
FVVPMTPTNV RKSFLKLPSV FVEKNLDKRP SHVSLWGSND IYWPVELHFS KGASFQAGDD  240
YDDDNAHNDE EEDEDEDIEY SSAQQLHKRK RLSSSTKSSI KDVGASTSIG QFLKGRPGVP  300
RNLHSIRDTV NDIALQRATA FKYVKPHSDV PRGMNPMMAR GENTALRRAE VFCSVQPYFL  360
QAMHHRDVHA PFLVFFPSLD DSAQQSIFCL DVSTAVNVER LEQTHSLLQI NIIDIPSEVF  420
TCSRLLLSFT LSLFRFQELP FDFAENHLDK RPSHVKLQGS NGESWSVKLY FANELAGFQD  480
GWIEFVHGQN FK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	1e-06	B3 family protein