PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0010734.1_g000006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 475aa MW: 50039.7 Da PI: 7.8861 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.3 | 9.1e-12 | 49 | 73 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG+C yG+rC+++H++ Rmu_sc0010734.1_g000006.1 49 EADCSYYLRTGICGYGSRCRYNHPR 73 789********************96 PP | |||||||
2 | zf-CCCH | 39.1 | 1.3e-12 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ Rmu_sc0010734.1_g000006.1 95 QPVCQYYMRTGTCKFGATCKYHHPK 119 689********************96 PP | |||||||
3 | zf-CCCH | 36.7 | 7.2e-12 | 139 | 165 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG+Ck+G++CkF+H++ Rmu_sc0010734.1_g000006.1 139 PGERECSYYVKTGQCKFGATCKFHHPQ 165 5789*********************97 PP | |||||||
4 | zf-CCCH | 35.3 | 2e-11 | 301 | 325 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Ck+G++C+++H+ Rmu_sc0010734.1_g000006.1 301 GQSECQYYLRTGDCKFGSSCRYHHP 325 7899********************8 PP | |||||||
5 | zf-CCCH | 35.6 | 1.6e-11 | 348 | 372 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC ++a+ G Ck+G+ CkF H++ Rmu_sc0010734.1_g000006.1 348 APLCTHYAQRGACKFGAACKFDHPM 372 68*********************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 475 aa Download sequence |
MERYGRNTEG TQSDPSPEWS GPGPETGLEE SMWQLGLGPG ESYPERPEEA DCSYYLRTGI 60 CGYGSRCRYN HPRDRTAVTG ALRAGAVEYP ERVGQPVCQY YMRTGTCKFG ATCKYHHPKQ 120 GGGSAAPVSL NYYGYPLRPG ERECSYYVKT GQCKFGATCK FHHPQLTGTQ SQVPSQAQAS 180 IIPAPTLYQT VQTPSVSSQP YGTVMVARPP LLPSSYVQSP YGPMLIPPGM VPFSGWSPYP 240 AGASPLASPS TQTAVGSGAL YGINQLSPSA PAYTGIFPTV PFSLGPPTSS QKEQSHPERP 300 GQSECQYYLR TGDCKFGSSC RYHHPAEVVA PNTPVVLSSI GLPSRPGAPL CTHYAQRGAC 360 KFGAACKFDH PMGTLSYSPS ASSLTDMPVA PYPVGSSIGT LAPSSSSSEL RPELNSGTSK 420 DSVSARMSSS LSTVSGSVGS TVSKDGVAHL GGQLSAQGSG PSTTSDNSTE CHSSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-160 | C3H family protein |