PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0010665.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 652aa    MW: 72768.6 Da    PI: 8.9538
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0010665.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-1821107599
                                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                +  s  l+s rl +p +f+ +++gk+  s  ++l  +sg+ W+v l    + g  ++  GW  Fv+++ L+ gDf++F++dg+ 
  Rmu_sc0010665.1_g000002.1  21 F--SADLSSERLKIPERFMIHMEGKT--SGIVVLSGPSGNAWNVHL--IEQNGDLFFHYGWPAFVRDHSLECGDFLIFRYDGEL 98 
                                4..77789999********9998884..44899999**********..88888899************************9866 PP

                                EE..EEEEE-S CS
                         B3  89 efelvvkvfrk 99 
                                +f  +v++f++
  Rmu_sc0010665.1_g000002.1  99 RF--TVQIFDQ 107
                                66..9***997 PP
2B346.85.3e-152172971394
                                TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                         B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                s  l +p kf  +h   ++++++++l +++g+sW+v+    ++   +++l +GW  Fv+ n++k gD+++F+l+++ ef+ ++
  Rmu_sc0010665.1_g000002.1 217 SYTLNIPYKFSVAHL--PNCKVKIVLLNLKGESWTVNSVPtTRVHTSHTLCGGWMAFVRYNDIKLGDICIFELVRECEFRVHI 297
                                55799*****99996..45999***************954566666799*************************999996655 PP
3B347.14.4e-15403491190
                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvv 81 
                                f+k++++ + + s  l +p +f +eh  +     +++++l++++g+ W+v+   + k++  +++ +GW  Fv+ n+++ gD+++
  Rmu_sc0010665.1_g000002.1 403 FVKIMKKFNISGSYTLKIPYQFSTEHlpN----YKTEIVLRNSKGECWTVNSVPDSKGRVvHTFCGGWMAFVRGNDVNIGDICI 482
                                778888888888889***********533....3468***************5544444379999******************* PP

                                EEE-SSSEE CS
                         B3  82 Fkldgrsef 90 
                                F+l+g se+
  Rmu_sc0010665.1_g000002.1 483 FELVGASEA 491
                                ***997665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    
MAEGALKVMP NARRPHFFAF FSADLSSERL KIPERFMIHM EGKTSGIVVL SGPSGNAWNV  60
HLIEQNGDLF FHYGWPAFVR DHSLECGDFL IFRYDGELRF TVQIFDQTAC EKEAAFHSQC  120
GQSSSYFEKL IGRKRAREEG CGLDRLLFEE STSSQQSKTY ENPGLDVVIY KAKQAIQNNL  180
NDRVCMQISS AHEVAQSFSS SNPYFLRIMK SFNISGSYTL NIPYKFSVAH LPNCKVKIVL  240
LNLKGESWTV NSVPTTRVHT SHTLCGGWMA FVRYNDIKLG DICIFELVRE CEFRVHIQTG  300
ETSSRLCAGL ALKGLSKKVK GNSPKVHTKS LRKIEMSETR KHGSTSKSIA KGASQSKAAS  360
KKLATRRKKS VDDELGSKAE LRMRLTLDEE KAARSFTSCF PNFVKIMKKF NISGSYTLKI  420
PYQFSTEHLP NYKTEIVLRN SKGECWTVNS VPDSKGRVVH TFCGGWMAFV RGNDVNIGDI  480
CIFELVGASE AVCSRREAVL TWVGGGLKRL SVLCIGISFS FVCRCLQARA KAAFFPAILM  540
GEGRQSGDGR RPPLLKGQNR SIWGWEAKGF GSGLLGLYRS GLHIQAGELG VVGSAPLSSY  600
TWVGFWDFWE VAYLALDPVL FLECCCDCVE CCDVHHEGLR RQDVQSSVPL GF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-25B3 family protein