PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0010384.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 540aa    MW: 60971.2 Da    PI: 5.6321
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0010384.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.72.7e-41411687128
                        NAM   7 FhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                                F Pt+eelv++yLkkk++g +  e++++i+e+d++k+eP +Lp+    +++a++ ew+fF++++ ky++++r+nr+tk+gyWk 
  Rmu_sc0010384.1_g000001.1  41 FLPTEEELVNHYLKKKIHGGNdSEINQIIPEIDLCKYEPAELPAllgtETEAHDMEWFFFTRKAYKYNKSSRSNRSTKKGYWKI 124
                                99***************99985677778***************656666666788***************************** PP

                        NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +gk++ ++++ +++++g+kktL+fy+gr pk++kt+Wv+hey l
  Rmu_sc0010384.1_g000001.1 125 SGKERGIKARrSKAVIGMKKTLTFYQGRVPKSKKTSWVIHEYYL 168
                                ********98566779**************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    
MPRNRVGSYD MSGLLPTSKA INTPSLFASA SQSSPSRQRG FLPTEEELVN HYLKKKIHGG  60
NDSEINQIIP EIDLCKYEPA ELPALLGTET EAHDMEWFFF TRKAYKYNKS SRSNRSTKKG  120
YWKISGKERG IKARRSKAVI GMKKTLTFYQ GRVPKSKKTS WVIHEYYLPG NGVIQKQAQG  180
DFVICRLKIR PDKKDSLVSN EGQSGSPSVS EMNQEGNVEL LFHQPQPQDC CSSALRSPVS  240
QELEAVLQTN NTNDDCNELQ SPFGDSDSCH QDGNEVSTCD EYETVYDVFP QLRDPPEENL  300
DSLFGPHQPQ DYCPSIQQSP IYTKLWYVPH QLQPQDYYPV ILQSPIYTKL GDVPHPLQPQ  360
DYEPSKLQSP IYTKLGNVPD ANLYCGECNN WQSAIKKKIS TDEVDVPFRQ IMSNSENQAT  420
DYRVLEVRMV HHPQIKENLE SVVYPFQPQD STLQPLMYTK FGDALHNIEC NELQSSFGDT  480
DSSLTKFLNT NFAFQDGFKE SNLPNSLGMV YHGDSGVSNC TNTEVQYASA LAIGKTLQCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.28e-35NAC family protein