PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0010202.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family BBR-BPC
Protein Properties Length: 311aa    MW: 35093.6 Da    PI: 10.0217
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0010202.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind366.35.7e-11213111301
                  GAGA_bind   1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdka 66 
                                mdd  ++e  r+k  yy+              ++ ++l   +++++ms+iaerd++irern+a+sek++a+a+rd+a+ qrd+a
  Rmu_sc0010202.1_g000012.1   1 MDDGRQHEngRHKQdYYRgapspwnmtaqqqvKEpNALV--MNKKIMSIIAERDSAIRERNAAISEKNEAFAARDEALRQRDEA 82 
                                77766655689999899999*999999887663335666..99***************************************** PP

                  GAGA_bind  67 laernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkk 150
                                +a+r+ al+erdn+++a   ++ns+  + p g +v +g+k ++   + +  +++d ++ +++  ++ea+pi+    ea +++++
  Rmu_sc0010202.1_g000012.1  83 FAQRDTALMERDNAFAAFHIRDNSM--NFPLGGGVQRGSKRMHYPSN-HPVNMADGPYSTKDVPITEAFPISVLSAEAIKSRQT 163
                                ********************99995..567899999******97766.779********************************* PP

                  GAGA_bind 151 kkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaC 234
                                k+++++k  k++ka++kk  +e+ +++ ++++   + ++e++++dl+ln vs+De+t+PvPvCsCtG++rqCYkWGnGGWqS+C
  Rmu_sc0010202.1_g000012.1 164 KRSKENKASKASKASRKKV-GEDLNRQASTDGI--KYRSEWDTQDLGLNLVSFDETTMPVPVCSCTGMPRQCYKWGNGGWQSSC 244
                                *999999999999988777.7788788888885..69*********************************************** PP

                  GAGA_bind 235 CtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                Ctt++S+yPLP+++++r+aR++grKmS+++f++lL++LaaeG+dls p+DLk++WA+HGtn+++ti+
  Rmu_sc0010202.1_g000012.1 245 CTTNMSMYPLPQMPNKRHARMGGRKMSGSVFTRLLSRLAAEGHDLSVPLDLKEYWARHGTNRYITIK 311
                                ******************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MDDGRQHENG RHKQDYYRGA PSPWNMTAQQ QVKEPNALVM NKKIMSIIAE RDSAIRERNA  60
AISEKNEAFA ARDEALRQRD EAFAQRDTAL MERDNAFAAF HIRDNSMNFP LGGGVQRGSK  120
RMHYPSNHPV NMADGPYSTK DVPITEAFPI SVLSAEAIKS RQTKRSKENK ASKASKASRK  180
KVGEDLNRQA STDGIKYRSE WDTQDLGLNL VSFDETTMPV PVCSCTGMPR QCYKWGNGGW  240
QSSCCTTNMS MYPLPQMPNK RHARMGGRKM SGSVFTRLLS RLAAEGHDLS VPLDLKEYWA  300
RHGTNRYITI K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.11e-132BBR-BPC family protein